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CSPI02G19490 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G19490
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionCST complex subunit CTC1
Genome locationChr2:17665801..17666656
RNA-Seq ExpressionCSPI02G19490
SyntenyCSPI02G19490
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0063096.1 putative transmembrane protein [Cucumis melo var. makuwa]3.1e-5796.77Show/hide
Query:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG
        MS PIEQQSPPG+QQNYVGHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDAS TAAASSLPAG
Subjt:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG

Query:  TMAVGTQQETKQEEPASQNPSANA
        TMAVGTQQETKQEEPASQNPSANA
Subjt:  TMAVGTQQETKQEEPASQNPSANA

KAG6598392.1 hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sororia]6.6e-4481.75Show/hide
Query:  MSLPIEQQSPP--GMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP
        MSLPIEQQSPP  GM   Y GHP SGSVGPVIGVL+VIIVFAVVAVVVGRLCSG SIMGYGHFDLESWAETKCSSCIDGRI+  PPRV+ S    A+SLP
Subjt:  MSLPIEQQSPP--GMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP

Query:  AGTMAVGTQQETKQEEPASQNPSANA
         GTMAV TQQETKQEEPASQNP+A+A
Subjt:  AGTMAVGTQQETKQEEPASQNPSANA

XP_022144319.1 uncharacterized protein LOC111014030 [Momordica charantia]6.0e-4582.26Show/hide
Query:  MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP
        MSLPIEQQSP  PGMQQ Y GH  +GSVGPVIGVL+VIIVFAVVAVVVGRLCSG++IMGYGHFDLESWAETKCSSCIDGRI+PPPPR + S    A++LP
Subjt:  MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP

Query:  AGTMAVGTQQETKQEEPASQNPSA
        A TMAV TQQETKQEEPASQNPSA
Subjt:  AGTMAVGTQQETKQEEPASQNPSA

XP_031737057.1 uncharacterized protein LOC116402140 [Cucumis sativus]3.9e-60100Show/hide
Query:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG
        MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG
Subjt:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG

Query:  TMAVGTQQETKQEEPASQNPSANA
        TMAVGTQQETKQEEPASQNPSANA
Subjt:  TMAVGTQQETKQEEPASQNPSANA

XP_038885752.1 uncharacterized protein LOC120076044 [Benincasa hispida]2.0e-4886.72Show/hide
Query:  MSLPIEQQSPPG--MQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP
        MSLPIEQQSPP   MQQNY GHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRI+PPPPRVD    AAA+SLP
Subjt:  MSLPIEQQSPPG--MQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP

Query:  AGTMAVGTQQETK--QEEPASQNPSANA
        AGTMA   QQETK  QEEPASQNP ANA
Subjt:  AGTMAVGTQQETK--QEEPASQNPSANA

TrEMBL top hitse value%identityAlignment
A0A0A0LP67 Uncharacterized protein1.9e-60100Show/hide
Query:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG
        MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG
Subjt:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG

Query:  TMAVGTQQETKQEEPASQNPSANA
        TMAVGTQQETKQEEPASQNPSANA
Subjt:  TMAVGTQQETKQEEPASQNPSANA

A0A5A7V9H6 Putative transmembrane protein1.5e-5796.77Show/hide
Query:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG
        MS PIEQQSPPG+QQNYVGHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDAS TAAASSLPAG
Subjt:  MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAG

Query:  TMAVGTQQETKQEEPASQNPSANA
        TMAVGTQQETKQEEPASQNPSANA
Subjt:  TMAVGTQQETKQEEPASQNPSANA

A0A6J1CRZ5 uncharacterized protein LOC1110140302.9e-4582.26Show/hide
Query:  MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP
        MSLPIEQQSP  PGMQQ Y GH  +GSVGPVIGVL+VIIVFAVVAVVVGRLCSG++IMGYGHFDLESWAETKCSSCIDGRI+PPPPR + S    A++LP
Subjt:  MSLPIEQQSP--PGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP

Query:  AGTMAVGTQQETKQEEPASQNPSA
        A TMAV TQQETKQEEPASQNPSA
Subjt:  AGTMAVGTQQETKQEEPASQNPSA

A0A6J1KK79 uncharacterized protein LOC1114960284.1e-3976.38Show/hide
Query:  MSLPIEQQSP--PGMQQNYVGHPGS-GSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSL
        MSLPI+QQSP  PGMQQ Y GH  S GSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGHFDLE WAE KCSSCIDGRI+ P PRV+ ST  AA+SL
Subjt:  MSLPIEQQSP--PGMQQNYVGHPGS-GSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSL

Query:  PAGTMAVGTQQETKQEEPASQNPSANA
        PA TM+V    +T+Q+EPASQNP  NA
Subjt:  PAGTMAVGTQQETKQEEPASQNPSANA

A0A6J5W971 Uncharacterized protein6.1e-2757.38Show/hide
Query:  MSLPIEQQSPPG--MQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP
        MS+P++QQ PP   +QQN   H   GS+G V+ VL+V+I+  VVAVV+GRLCSGRSIMGYGH+DLESWAETKCSSCIDGRI PP  R + S ++ ++S P
Subjt:  MSLPIEQQSPPG--MQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLP

Query:  AGTMAVGTQQETKQEEPASQNP
        A T       E +QEE + Q P
Subjt:  AGTMAVGTQQETKQEEPASQNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G26520.1 unknown protein1.3e-1838.57Show/hide
Query:  SLPIEQQSPPGMQ----QNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRI---------TPPPPRVDA
        S+P+  Q PP  +     + V   G+ ++GP I V IV+ V  V+A V+GRLCSG++I+GYG +D+E WAE++C SCIDG I         TPPP +   
Subjt:  SLPIEQQSPPGMQ----QNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRI---------TPPPPRVDA

Query:  STTAAASSLPAGTMA------VGTQQETKQEEPASQNPSA
         T++  S+   G +A       G +Q++   EP  Q PS+
Subjt:  STTAAASSLPAGTMA------VGTQQETKQEEPASQNPSA

AT3G57500.1 unknown protein2.4e-0741.25Show/hide
Query:  SVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRI-----TPPPPRVDASTTAAASSLPA
        S+  ++ VL VI + +V+A V  RLC GR +   G  D+E W E KC SCID  I      P PP      TA   S PA
Subjt:  SVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRI-----TPPPPRVDASTTAAASSLPA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTCCCAATTGAACAACAATCTCCGCCGGGAATGCAGCAAAATTATGTCGGCCATCCGGGTAGCGGCTCCGTCGGTCCGGTCATTGGAGTCCTCATCGTCATCAT
TGTGTTTGCCGTCGTCGCCGTCGTTGTTGGGCGGCTGTGCTCGGGAAGAAGCATAATGGGCTACGGCCATTTCGACTTGGAGAGCTGGGCGGAGACAAAATGTTCCTCTT
GCATTGACGGAAGGATAACCCCACCACCGCCGAGGGTCGATGCCTCCACCACTGCCGCCGCCTCCTCTCTCCCGGCAGGGACAATGGCGGTCGGAACCCAGCAAGAAACT
AAGCAAGAAGAACCAGCTTCTCAAAATCCATCTGCCAACGCTTGA
mRNA sequenceShow/hide mRNA sequence
GCACAATCTGGGAAAGAGATTGGACTTTTTAACACTCCCAAAGATTCCAACTCTTCTGATTACATTGCCTTTTTCTTTTCGTCCTTTTACAGTGCTCAGGGTTCTTATTG
TTTCCATCAAAATTACAGTAAAAGAAACATCTTTTTCTCTATTGGTCACTCTTTTGCCCTTCTCTTCTTCTTTACTCCATCTTTGATATCTTCTCCCCACTTACAGAGTG
ACTCTGTTTTCTTCAGGTCCGGATTTTGCTGTTAAAAAAAAGGGTAAATCTTGTGGCCATCGCCGGAGCATTACATTACAGCTCTTGCTCCGGCCAAATGTCACTCCCAA
TTGAACAACAATCTCCGCCGGGAATGCAGCAAAATTATGTCGGCCATCCGGGTAGCGGCTCCGTCGGTCCGGTCATTGGAGTCCTCATCGTCATCATTGTGTTTGCCGTC
GTCGCCGTCGTTGTTGGGCGGCTGTGCTCGGGAAGAAGCATAATGGGCTACGGCCATTTCGACTTGGAGAGCTGGGCGGAGACAAAATGTTCCTCTTGCATTGACGGAAG
GATAACCCCACCACCGCCGAGGGTCGATGCCTCCACCACTGCCGCCGCCTCCTCTCTCCCGGCAGGGACAATGGCGGTCGGAACCCAGCAAGAAACTAAGCAAGAAGAAC
CAGCTTCTCAAAATCCATCTGCCAACGCTTGATTTCTAAGATGGGAATCGTTGATAGTTGGATTATTAGCTCAAAATTTTCTCTGGAATTTTCTTCTTTTTTTTTCCCTT
CATTTGATTCTTTTTTCTTCCGCTGTCCGAATTAGAAAATTTGTGAAACTCTCTTAAATGTAATGCCATTTTTCTGTCAGCTTTTC
Protein sequenceShow/hide protein sequence
MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQET
KQEEPASQNPSANA