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CSPI02G20030 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G20030
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSANT domain-containing protein
Genome locationChr2:17911222..17911529
RNA-Seq ExpressionCSPI02G20030
SyntenyCSPI02G20030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065236.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]4.3e-3397.33Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSL
        MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQRQSL
Subjt:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSL

KAE8652106.1 hypothetical protein Csa_022050 [Cucumis sativus]2.5e-33100Show/hide
Query:  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF
        VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF
Subjt:  VYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF

XP_008444713.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]3.6e-4097.87Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQR
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR

XP_031737271.1 protein RADIALIS-like 4 [Cucumis sativus]1.3e-42100Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR

XP_038886301.1 protein RADIALIS-like 3 [Benincasa hispida]3.5e-3588.04Show/hide
Query:  SSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR
        +S+ SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLA A+GGKTA+EVK HY+MLVEDVHNIETG+VPLPNYSKHYSY NNF+DEEQR
Subjt:  SSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LNL9 SANT domain-containing protein1.2e-46100Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF

A0A1S3BBR2 protein RADIALIS-like 41.7e-4097.87Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR
        MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQR
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR

A0A5A7VFX7 Protein RADIALIS-like 42.1e-3397.33Show/hide
Query:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSL
        MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSY NNF+DEEQRQSL
Subjt:  MFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSL

A0A6J1K580 protein RADIALIS-like 48.7e-3282.61Show/hide
Query:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK--HYSYNNNFVDEEQR
        T+SSSSSSSS WSSKQNK+FENALTVYDKDSPDRWQKLA +VGGKTA+EVKRHYEMLVEDVHNIETG+VPLPNYSK   +  +N F+DEEQR
Subjt:  TTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSK--HYSYNNNFVDEEQR

A0A6J1KQS6 protein RADIALIS-like 41.6e-3080.43Show/hide
Query:  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYS-KHYSYNNNFVDEEQR
        S++SSSSSSS+ WSSKQNK+FENALTVYDKDSPDRWQKLA AVGGKTA+EVKRHYEMLVEDVHNIE G++PLPNYS     Y +NF+DEEQR
Subjt:  STTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYS-KHYSYNNNFVDEEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 16.6e-2154.74Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ
        MASS  S SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N  + +E+++
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ

Q1A173 Protein RADIALIS-like 61.6e-2260.67Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ
        S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S + +  D + R+
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ

Q1G3C4 Protein RADIALIS-like 43.6e-1961.11Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        +SSS S+SSW+++++K FE AL  +DKD+PDRWQK+ARAVGGK+ +EVKRHYE+L+ DV++IE+G+ P P Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

Q6NNN0 Protein RADIALIS-like 33.3e-2062.5Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        S+S SSS+SW+ K+NK+FE AL  YD+D+PDRW  +ARAVGGK+A+EV+RHYE+L+ DV++IE+G+ P PNY
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

Q8GW75 Protein RADIALIS-like 52.7e-2273.61Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        SSS SSSSSW+SKQNKMFE AL VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.9e-2373.61Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        SSS SSSSSW+SKQNKMFE AL VYDKD+PDRWQ +A+AVG K+A+EVKRHY++LVED+ NIE   VPLP Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

AT1G75250.1 RAD-like 61.5e-2361.36Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR
        S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S + +  D + R
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQR

AT1G75250.2 RAD-like 61.1e-2360.67Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ
        S+S SS S W+  QNKMFE AL VYDKD+PDRW  +A+AVGGKT +EVKRHY++LVED+ NIETG+VPLPNY    S + +  D + R+
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ

AT2G18328.1 RAD-like 42.6e-2061.11Show/hide
Query:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY
        +SSS S+SSW+++++K FE AL  +DKD+PDRWQK+ARAVGGK+ +EVKRHYE+L+ DV++IE+G+ P P Y
Subjt:  SSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNY

AT4G39250.1 RAD-like 14.7e-2254.74Show/hide
Query:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ
        MASS  S SS SS SW++KQNK FE AL  YD+D+P+RWQ +A+ VGGKT +EVKRHYE+LV+D+++IE G VP PNY       N  + +E+++
Subjt:  MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCATCTACTACTTCTTCTTCTTCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTTGAAAATGCCCTTACAGTGTACGACAAGGACTCTCCCGA
CCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCAGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAAAGTTC
CTTTGCCTAATTACTCTAAACATTATTCTTACAACAACAACTTTGTTGATGAAGAACAAAGGCAATCTCTCTTTCACTTTTAA
mRNA sequenceShow/hide mRNA sequence
CTAAAATGGCATCATCTACTACTTCTTCTTCTTCATCTTCATCTTCAAGCTGGAGTTCAAAGCAAAACAAAATGTTTGAAAATGCCCTTACAGTGTACGACAAGGACTCT
CCCGACCGGTGGCAGAAGCTGGCAAGAGCAGTCGGCGGGAAGACGGCAGACGAGGTGAAGAGACACTATGAGATGCTGGTTGAGGACGTCCATAATATTGAGACTGGCAA
AGTTCCTTTGCCTAATTACTCTAAACATTATTCTTACAACAACAACTTTGTTGATGAAGAACAAAGGCAATCTCTCTTTCACTTTTAA
Protein sequenceShow/hide protein sequence
MASSTTSSSSSSSSSWSSKQNKMFENALTVYDKDSPDRWQKLARAVGGKTADEVKRHYEMLVEDVHNIETGKVPLPNYSKHYSYNNNFVDEEQRQSLFHF