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CSPI02G20120 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G20120
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSANT domain-containing protein
Genome locationChr2:17957941..17959575
RNA-Seq ExpressionCSPI02G20120
SyntenyCSPI02G20120
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065228.1 protein RADIALIS-like 4 [Cucumis melo var. makuwa]5.4e-4496.77Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQR
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR

XP_004152694.1 protein RADIALIS-like 4 [Cucumis sativus]6.6e-50100Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_008444724.1 PREDICTED: protein RADIALIS-like 4 [Cucumis melo]2.1e-4897.03Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_022961874.1 protein RADIALIS-like 4 [Cucurbita moschata]3.0e-4286.14Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

XP_038884277.1 protein RADIALIS-like 4 [Benincasa hispida]1.3e-4594.06Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSG+SSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKPI  NGS+Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

TrEMBL top hitse value%identityAlignment
A0A0A0LPB1 SANT domain-containing protein3.2e-50100Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A1S3BBS2 protein RADIALIS-like 41.0e-4897.03Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A5A7VC75 Protein RADIALIS-like 42.6e-4496.77Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR
        MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKT EEVKRHYDILLQDLMHIESGKVPLPNYKP+ PNGSMYDDEQR
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQR

A0A6J1HFA3 protein RADIALIS-like 41.4e-4286.14Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

A0A6J1K2Q1 protein RADIALIS-like 41.4e-4286.14Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL
        MA+S FKSSG+SSSSWT KQNKKFEDAL LYPEDTPDRWQKVAR VGGKT EEVKRHYDIL+QDLMHIESGK+PLPNYKPI  NG++Y DEQRLMKNLKL
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKL

Query:  Q
        Q
Subjt:  Q

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.0e-2457.28Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ

Q1A173 Protein RADIALIS-like 63.1e-2661.7Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL

Q58FS3 Transcription factor RADIALIS3.2e-2355.32Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ
        S+  S   W+ K+NK FE AL +Y +DTPDRW  VARAV G+TPEEVK+HY+IL++D+ +IESGKVP PNY+     G+M  DE+R  +NLK++
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ

Q8GW75 Protein RADIALIS-like 51.5e-2558.65Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN
        MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+ EEVKRHYDIL++DLM+IE   VPLP YK +   + +  + D + RLMKN
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

Q9SIJ5 Protein RADIALIS-like 25.8e-2557.69Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKTPEE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.1e-2658.65Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN
        MASSS     +SSSSWT KQNK FE AL +Y +DTPDRWQ VA+AVG K+ EEVKRHYDIL++DLM+IE   VPLP YK +   + +  + D + RLMKN
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI---APNGSMYDDEQRLMKN

Query:  LKLQ
        +++Q
Subjt:  LKLQ

AT1G75250.1 RAD-like 66.0e-2561.45Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDD
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N    +D
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDD

AT1G75250.2 RAD-like 62.2e-2761.7Show/hide
Query:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL
        +S +S S WT  QNK FE AL +Y +DTPDRW  VA+AVGGKT EEVKRHYDIL++DL++IE+G+VPLPNYK    N  S+ D + R MKNLK+
Subjt:  SSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNG-SMYDDEQRLMKNLKL

AT2G21650.1 Homeodomain-like superfamily protein4.2e-2657.69Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN
        MAS S  S G  S SWT+KQNK FE AL +Y +DTPDRW  VARAVGGKTPEE KR YD+L++D+  IE+G VP P+YK    N   G + D+E+R M++
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPN---GSMYDDEQRLMKN

Query:  LKLQ
        +KLQ
Subjt:  LKLQ

AT4G39250.1 RAD-like 17.1e-2657.28Show/hide
Query:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL
        MASSS   S  SS SWT KQNK FE AL  Y +DTP+RWQ VA+ VGGKT EEVKRHY++L+QD+  IE+G VP PNY+      NG +  +E+R M+N+
Subjt:  MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPI--APNGSMYDDEQRLMKNL

Query:  KLQ
        +LQ
Subjt:  KLQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACTCTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGA
TAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGTAAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTC
CTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATGAGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAA
mRNA sequenceShow/hide mRNA sequence
ACCTTGACTTGGTCCTCTTCTTAAACGGGATCCTTAAGTCTCTTTCTTACGGCCATTATTTCTTCGGCTTTCTTTACAGTATCTTCACCTACTTATTCTCCTGTGTATTG
TAAGACAAACAATATATCTTCACCCTTTCAAAACTTTTCATCCAAACTTCCTTTATATAATGGCATCAAGCTCTTTTAAATCTTCAGGCAATTCTAGCTCCTCATGGACT
CTTAAGCAAAACAAAAAATTTGAGGACGCTCTGGTTTTATATCCTGAGGACACGCCAGATAGATGGCAAAAGGTGGCCAGGGCAGTGGGTGGAAAAACACCTGAGGAAGT
AAAAAGGCATTATGATATCCTGTTGCAAGATCTCATGCATATAGAATCTGGAAAAGTTCCTCTTCCTAACTACAAGCCCATTGCTCCCAACGGTTCAATGTATGATGATG
AGCAGAGGCTCATGAAGAATCTAAAGCTCCAATAAGGCAAGGTATTATACCAACGATAAAATAAGAGCTGTAGAAGCGTTGTTCTCGATAATTTCAAGAATATAGCTTGG
TGTCGGTATTTCTCTACTTTCCCGCTCTGTTTGTCTTTTCTACCATATATTGCTAAACTATTGTAACCTGTGAAGCGAACTATAATCTATTGTAAGTTGTAATCTGATTG
TTCATGTACC
Protein sequenceShow/hide protein sequence
MASSSFKSSGNSSSSWTLKQNKKFEDALVLYPEDTPDRWQKVARAVGGKTPEEVKRHYDILLQDLMHIESGKVPLPNYKPIAPNGSMYDDEQRLMKNLKLQ