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CSPI02G20160 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G20160
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationChr2:17977560..17978406
RNA-Seq ExpressionCSPI02G20160
SyntenyCSPI02G20160
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585589.1 hypothetical protein SDJN03_18322, partial [Cucurbita argyrosperma subsp. sororia]3.1e-4875.74Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKR SSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
XP_004152691.1 uncharacterized protein LOC101215562 [Cucumis sativus]4.9e-7899.32Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKR SSFPPAKDDVAVEAKFVENKMDRKNLEELKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
XP_008444729.1 PREDICTED: uncharacterized protein LOC103487979 [Cucumis melo]4.6e-6889.12Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLE+EHLRA+SLPV DRYD E VG+DYKR SSFPPA+ DVAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
XP_022951681.1 uncharacterized protein LOC111454424 [Cucurbita moschata]2.4e-4875.74Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKR SSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
XP_038886573.1 uncharacterized protein LOC120076743 [Benincasa hispida]1.1e-6180.95Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLM GWNSPVLDPKSVKFKRNRSLTK+EIEAYWKSK+K E+EHLRA+S+PVD   D ETVG+DYKR SSFPPAK DV+ EA+F EN ++R+NLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGA+K   SLYGVADVASCKLNHSNGVG+
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
TrEMBL top hitse value%identityAlignment
A0A0A0LRI3 Uncharacterized protein2.4e-7899.32Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKR SSFPPAKDDVAVEAKFVENKMDRKNLEELKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
A0A1S3BBS7 uncharacterized protein LOC1034879792.2e-6889.12Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLE+EHLRA+SLPV DRYD E VG+DYKR SSFPPA+ DVAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
A0A5A7VD66 Putative DNA polymerase epsilon catalytic subunit A2.2e-6889.12Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGW+SPVLDPKSVKFKRNRSLTKEEI+AYWKSKRKLE+EHLRA+SLPV DRYD E VG+DYKR SSFPPA+ DVAVE+KFVENK+DRKNLEEL+K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
        +GWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNH+NGVGA
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA
A0A6J1GI71 uncharacterized protein LOC1114544241.1e-4875.74Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKR SSFP A      E  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
A0A6J1KP90 uncharacterized protein LOC1114963582.5e-4875.74Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK
        MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLE+EHLRA+S+PVD     +TVG+DYKR SSF PA    A +  F E+ ++RKNLE+LKK
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKK

Query:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
         GWW RSNSAFLNEPPVLDGA+KA  S YGV DVAS
Subjt:  IGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein5.3e-1437.5Show/hide
Query:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRK-LEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELK
        MGSLM GW+S V DPKSV  +R +SLT+EEI+ +WK+K+K  E+EH++A S  V                          A E K V++  + ++    K
Subjt:  MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRK-LEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELK

Query:  KIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVA
          GWW ++  AFLNEP   +G     VS + VA +A
Subjt:  KIGWWTRSNSAFLNEPPVLDGASKACVSLYGVADVA

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTCTCTAATGGGCGGATGGAATTCTCCCGTTCTCGATCCCAAATCAGTCAAGTTCAAGAGAAATCGGTCACTTACGAAAGAAGAAATCGAAGCATACTGGAAATC
GAAGAGGAAATTGGAGAAAGAACATCTCAGAGCGGTTTCTTTGCCGGTGGACGATCGTTATGATTGTGAAACAGTCGGATTAGACTACAAAAGGTTGAGTTCGTTTCCGC
CGGCGAAGGACGACGTTGCGGTGGAAGCAAAATTTGTTGAGAACAAAATGGACAGAAAAAACCTAGAGGAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCG
TTTCTGAATGAACCGCCAGTCCTCGACGGCGCTTCAAAAGCTTGCGTGTCGTTGTACGGCGTCGCCGACGTGGCGTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGC
ATAG
mRNA sequenceShow/hide mRNA sequence
TATTTTCGCTCAATTTTTTACGCCAACCTAAAATTTTTCAGTATCGAAGAGAAATGGGCTCTCTAATGGGCGGATGGAATTCTCCCGTTCTCGATCCCAAATCAGTCAAG
TTCAAGAGAAATCGGTCACTTACGAAAGAAGAAATCGAAGCATACTGGAAATCGAAGAGGAAATTGGAGAAAGAACATCTCAGAGCGGTTTCTTTGCCGGTGGACGATCG
TTATGATTGTGAAACAGTCGGATTAGACTACAAAAGGTTGAGTTCGTTTCCGCCGGCGAAGGACGACGTTGCGGTGGAAGCAAAATTTGTTGAGAACAAAATGGACAGAA
AAAACCTAGAGGAATTGAAGAAAATTGGCTGGTGGACGAGGAGTAATTCGGCGTTTCTGAATGAACCGCCAGTCCTCGACGGCGCTTCAAAAGCTTGCGTGTCGTTGTAC
GGCGTCGCCGACGTGGCGTCGTGTAAGTTGAATCACAGCAATGGAGTCGGTGCATAGTAATTACACTGAAAGTGTGAAAAAAAGAAAAGAAAAGAAAAGAGAACTTAAGA
TAAGAATATATGTAAAATTAATATGAATTATAAAC
Protein sequenceShow/hide protein sequence
MGSLMGGWNSPVLDPKSVKFKRNRSLTKEEIEAYWKSKRKLEKEHLRAVSLPVDDRYDCETVGLDYKRLSSFPPAKDDVAVEAKFVENKMDRKNLEELKKIGWWTRSNSA
FLNEPPVLDGASKACVSLYGVADVASCKLNHSNGVGA