; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G20540 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G20540
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationChr2:18180231..18185419
RNA-Seq ExpressionCSPI02G20540
SyntenyCSPI02G20540
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0006413 - translational initiation (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003743 - translation initiation factor activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain
IPR040504 - TFIIF, beta subunit, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152667.1 transcription initiation factor IIF subunit beta [Cucumis sativus]6.9e-144100Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_008444765.1 PREDICTED: transcription initiation factor IIF subunit beta-like [Cucumis melo]5.8e-14399.23Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_022144312.1 transcription initiation factor IIF subunit beta [Momordica charantia]1.9e-14197.69Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD+LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_023002475.1 transcription initiation factor IIF subunit beta [Cucurbita maxima]3.3e-13896.54Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

XP_038884084.1 transcription initiation factor IIF subunit beta-like [Benincasa hispida]2.7e-14098.46Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

TrEMBL top hitse value%identityAlignment
A0A0A0LRL0 Transcription initiation factor IIF subunit beta3.3e-144100Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A1S3BBV5 Transcription initiation factor IIF subunit beta2.8e-14399.23Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A5A7VAJ9 Transcription initiation factor IIF subunit beta2.8e-14399.23Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MED+HGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1CTB7 Transcription initiation factor IIF subunit beta9.1e-14297.69Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDEHG GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD+LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPH ENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE+TGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

A0A6J1KP21 Transcription initiation factor IIF subunit beta1.6e-13896.54Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
        MEDE+G GGSSSNLDTGKADRSVWLMKCPLLVAKSWQ+HPPSD LPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEA

Query:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK
        SQGK+SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSK+K+KVAPVKQ +VKRTRRDRGELEDIMFK
Subjt:  SQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFK

Query:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
        LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE
Subjt:  LFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE

SwissProt top hitse value%identityAlignment
O94424 Transcription initiation factor IIF subunit beta4.5e-2131.15Show/hide
Query:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE-
        E++      + +LD G+    VWL+K P  +   W + P  D+  L  V +  D +Q    +S          E  +VPK ++L +   FV    VF E 
Subjt:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFV-PMCVFSE-

Query:  ---ASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGELE
           +S    ++ G V H+ ++ P     + Y ++ ++R   +    R++Q+ID DRG  +   PG +G  S ST+   + V P     +K +R  R EL 
Subjt:  ---ASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLIS-STSKEKKKVAPVKQSDVKRTRRDRGELE

Query:  DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE
        DI+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++
Subjt:  DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE

P41900 General transcription factor IIF subunit 22.6e-1626.28Show/hide
Query:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-----------------DSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFS
        ED+  +     +LD   A R VWL+K P  +A+ W+  P +                  SL L   +L+LDP +   +  +         +   V K  +
Subjt:  EDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPS-----------------DSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFS

Query:  LNMFKDFVP-------MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVA
        L +F    P           ++    K+ MEG++  K + +P ++N   Y KL  E   K+    R++Q ID    +     P      +   +E+KK  
Subjt:  LNMFKDFVP-------MCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVA

Query:  PVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
            ++ K+ R D+  + D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Subjt:  PVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q01750 General transcription factor IIF subunit 25.2e-1729.15Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y KL R +  +S    R  Q  D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
           + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q2T9L9 General transcription factor IIF subunit 25.2e-1728.74Show/hide
Query:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK
        +L   K +  VWL+K P  +++ W   P    +   ++  +    Q     S     ++A   + G  P S S      FV        + VF+E+S  K
Subjt:  NLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGT-ETGNVPKSFSLNMFKDFV-------PMCVFSEASQGK

Query:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER
        +S+EG V  + + +P +   E Y +L R +  +S    R  Q +D     + +P+      I    K+K+        D KR R D+  + D++F  FE+
Subjt:  VSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFER

Query:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
           + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+
Subjt:  QPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Q54KT7 General transcription factor IIF subunit 22.6e-1628.57Show/hide
Query:  LDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEH
        ++T  AD  VWL+K P  +++SWQ         + +  +    ++  ++ SL +     G + G   +  +     D  P+ +FSE   G +++EG +  
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGKVEH

Query:  KFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKRTRRDRGELEDIMFKLFERQP
        + D+K   E+   Y  L + R  K   K R  QVID               L + T     K KV+ V     K+S  K+ +    E+ D++F  F  + 
Subjt:  KFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISST--SKEKKKVAPV-----KQSDVKRTRRDRGELEDIMFKLFERQP

Query:  NWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK
        +  LK L   T+QP   LK IL ++C+ NKRG     YELKPE++
Subjt:  NWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYK

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit8.0e-9867.78Show/hide
Query:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSW--------QAHPPSDSLP-LAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDF
        MED H       NLD  K+DRS+WLMKCP++V K+W         +   SDS P +AK++  +DPL+ D  S  +FKM M G E GN+PK ++LNMF DF
Subjt:  MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSW--------QAHPPSDSLP-LAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDF

Query:  VPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR
        VPM  FS+ +QG  + EGKV+HKFDMKP+ E +E Y +LCRERT+K+MVKNRQIQVIDNDRGVHMRPMPGM+GL+SS SKEK+K  PVKQ++VKRTRRDR
Subjt:  VPMCVFSEASQGKVSMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDR

Query:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE
        GELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E DTGG+
Subjt:  GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVE-DTGGE

AT3G52270.1 Transcription initiation factor IIF, beta subunit2.8e-7958.57Show/hide
Query:  LDTGKADRSVWLMKCPLLVAKSWQAH--------PPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV
        L+TG A+RS+ LMK P LVA S Q+H        P     P AKVIL +DPL + E    QF ME+A  ++GN+P+ ++L+M KDF+PM VF E+S GK+
Subjt:  LDTGKADRSVWLMKCPLLVAKSWQAH--------PPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKV

Query:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ
        S+EGK+++KFDM+PH+EN+E YG+LCRERTNK M KNRQIQVIDN RG+HMRPMPGM+  I + + EKKK+   + S++KRTRRDR E+E++MF LFERQ
Subjt:  SMEGKVEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQ

Query:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED
         NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Subjt:  PNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVED


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGATGAGCACGGCAGCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCATTGCTAGTCGCTAAGTCGTGGCA
GGCTCATCCTCCATCTGATTCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAA
CTGAGACTGGAAACGTGCCAAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAA
GTGGAACATAAATTTGATATGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGT
GATAGACAATGACCGTGGTGTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACG
TGAAAAGAACTAGAAGAGATCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCT
GCTCAATTCTTGAAAGAGATACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACAC
CGGTGGAGAGTAG
mRNA sequenceShow/hide mRNA sequence
GCAACAATCAGAAGCGGCGGGTCGCACCACAAATCAGTGTGTTTCGTCAGAAGGAAGTCAATACTCGATTGAGAGATCAACTCTATAGTCTATACTCTCGTTTTAGAATA
CAGATTACATCACTTGTACGATAATCTTCTGCTTCTGATTGCGTAATATCAAACCTCCCTTTGATTTCCGACCACCGCCTTCCACTTCTTTAGGGTCCACCGTCGTCTCC
AGAAAAGAAAAAAAATAGGAACAAAGTTGCAGTAAATCCGCCGTTGAAAATTCAGAAGAGAGAGAGAGGGTGATTTTGTAAGTTAATAGATATGGAAGATGAGCACGGCA
GCGGCGGTAGTAGCAGTAACTTGGATACAGGCAAGGCGGATAGATCAGTGTGGCTAATGAAGTGTCCATTGCTAGTCGCTAAGTCGTGGCAGGCTCATCCTCCATCTGAT
TCTCTTCCTCTCGCTAAGGTCATTCTTTCTCTCGATCCTCTTCAATCCGACGAGTCTTCTTCTCTCCAGTTCAAGATGGAGATGGCTGGAACTGAGACTGGAAACGTGCC
AAAAAGTTTTTCCTTAAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTTTCAGAGGCAAGTCAAGGCAAGGTGTCAATGGAAGGGAAAGTGGAACATAAATTTGATA
TGAAGCCTCACAGTGAAAATCTTGAAATGTACGGGAAATTGTGCCGTGAAAGGACAAACAAGTCCATGGTTAAGAATAGACAAATTCAAGTGATAGACAATGACCGTGGT
GTGCATATGAGGCCTATGCCTGGCATGGTTGGTTTGATCAGTTCAACTTCAAAGGAAAAGAAGAAGGTGGCGCCAGTTAAACAATCAGACGTGAAAAGAACTAGAAGAGA
TCGTGGGGAACTAGAAGATATAATGTTCAAGCTATTTGAAAGACAACCAAATTGGGCCCTAAAGCAACTAGTCCAAGAAACTGATCAACCTGCTCAATTCTTGAAAGAGA
TACTAAATGAGCTCTGTGTCTACAACAAGAGAGGGACTAATCAAGGAACGTACGAGCTTAAGCCCGAATACAAGAAATCTGTTGAGGACACCGGTGGAGAGTAGGTTAGT
TTTTGACTGTATCATTATATAGATTCCCTTTTCTTGGGGTAAGGAAATGGTCAGAAATAAATCTGCTAATTTAAGAGGGGAAAAAATATTTTGCTTTTCCTTTAGTTATA
TTTTCTTGGGAGGGGAGAGATGGGAGGTTGAAAGAAGTTGGTTTAAATTAATTGCTATAGGTAGCTTTATACTGAAGTAAAACCAAATATGAAATGAAAGTTGCGGGGAG
GGAGGGAGTTTTTCTTATGGCAATTACGTGCAAGATCGTCGGAAGTTACAAGATGAATTTGTATAATGAATTTTATGACCATACGAAAATGATGGAAAACAGATTTCACA
AACTTGATTTTCATTTTGTCTTGTGTTATTCTAATTACTAGTCAAGGAA
Protein sequenceShow/hide protein sequence
MEDEHGSGGSSSNLDTGKADRSVWLMKCPLLVAKSWQAHPPSDSLPLAKVILSLDPLQSDESSSLQFKMEMAGTETGNVPKSFSLNMFKDFVPMCVFSEASQGKVSMEGK
VEHKFDMKPHSENLEMYGKLCRERTNKSMVKNRQIQVIDNDRGVHMRPMPGMVGLISSTSKEKKKVAPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQP
AQFLKEILNELCVYNKRGTNQGTYELKPEYKKSVEDTGGE