| GenBank top hits | e value | %identity | Alignment |
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| KAA0065060.1 RNA polymerase sigma factor sigC [Cucumis melo var. makuwa] | 2.8e-267 | 92.05 | Show/hide |
Query: SKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILM
+KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTS +DLLNLEEIEMNSGAKSL +HYGIKST PSKVEDNFSS TS+PTGKASPFGILM
Subjt: SKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILM
Query: ENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIA
ENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKTNDQN +VTVYS K+AGRRSVKKRAMDNADK+A
Subjt: ENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIA
Query: SRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRST
SR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA NEAEMSTG+KVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG FCRDELLRST
Subjt: SRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRST
Query: NSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIA
NSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQIP SLTKAINQIQKARKVLN GRRYSDDDIA
Subjt: NSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIA
Query: RATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISK
RATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKR+LMKKDIFNILQ LESRERQ LVLRYGL+DF+PKSLEEIGKLLH+SK
Subjt: RATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISK
Query: EWVRKIEKKAMTKLKNEETVKHLSHYLD
EWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: EWVRKIEKKAMTKLKNEETVKHLSHYLD
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| XP_004148429.2 RNA polymerase sigma factor sigC isoform X1 [Cucumis sativus] | 4.3e-310 | 99.64 | Show/hide |
Query: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Subjt: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Query: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
GIKST PSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
Subjt: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
Query: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Subjt: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Query: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Subjt: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Query: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
SRERQ LVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
Subjt: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 1.2e-286 | 92.32 | Show/hide |
Query: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
MMGT FRPNL+WGFQIQTHSLKNSPSKLSP+ASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTS +DLLNLEEIEMNSGAKSL +HY
Subjt: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Query: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
GIKST PSKVEDNFSS TS+PTGKASPFGILMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKT
Subjt: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
Query: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQN +VTVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA NEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFG FCRDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Query: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
IP SLTKAINQIQKARKVLN GRRYSDDDIARATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKRKLMKKDIFNILQ LE
Subjt: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Query: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
SRERQ LVLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| XP_031737166.1 RNA polymerase sigma factor sigC isoform X2 [Cucumis sativus] | 1.8e-258 | 99.58 | Show/hide |
Query: MNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLP
MNSGAKSLGPMHYGIKST PSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLP
Subjt: MNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLP
Query: IEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIR
IEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIR
Subjt: IEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIR
Query: ETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS
ETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS
Subjt: ETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKS
Query: MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKL
MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKL
Subjt: MSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKL
Query: MKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
MKKDIFNILQRLESRERQ LVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
Subjt: MKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 1.3e-269 | 85.99 | Show/hide |
Query: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
MMGTSFRPNL+WGFQIQTHS K SPSKL P+ASKGREAAFNSGRLSFFSSI EEGESI RETLKTYTCLSEAPQTSA+DLLNLEEIEMN GAKSL P+HY
Subjt: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Query: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPI----EGGEDHNV
GIK+T PSKVEDNFSSCTS P+GKASPFG+LMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LPI E DHNV
Subjt: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPI----EGGEDHNV
Query: NQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGR
NQKT D+ND++ VYS K+A RRSVKKRAMD+ADK+ S+ L TRA KEKIH S + SRKK+SNS KRRLI+A NEAEMSTGVKVVANLERIRETLEKESGR
Subjt: NQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGR
Query: IASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNS
+ SMSCWA AA VDIKDL+KQLQFG FC+DELLRSTNSL++FLA+KYRCSGLPMEDLVQAG+LGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARN+
Subjt: IASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNS
Query: RGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNIL
RGIQIP SLTKAINQIQKARKVLN+ GRRYSDDDIA+ATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTADMSIQSPEETVK+KLMKKDIFN+L
Subjt: RGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNIL
Query: QRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
+ LESRERQ LVLRYGLVDF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKL++EETV++ SHYLD
Subjt: QRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A0A0LLW1 Uncharacterized protein | 2.1e-310 | 99.64 | Show/hide |
Query: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Subjt: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Query: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
GIKST PSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
Subjt: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
Query: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Subjt: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Query: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Subjt: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Query: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
SRERQ LVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
Subjt: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| A0A1S3BBM8 RNA polymerase sigma factor sigC | 5.8e-287 | 92.32 | Show/hide |
Query: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
MMGT FRPNL+WGFQIQTHSLKNSPSKLSP+ASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTS +DLLNLEEIEMNSGAKSL +HY
Subjt: MMGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHY
Query: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
GIKST PSKVEDNFSS TS+PTGKASPFGILMENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKT
Subjt: GIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKT
Query: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
NDQN +VTVYS K+AGRRSVKKRAMDNADK+ASR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA NEAEMSTG+KVVANLERIRETLEKESGRIASM
Subjt: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
SCWAEAASVDIKDLQKQLQFG FCRDELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Query: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
IP SLTKAINQIQKARKVLN GRRYSDDDIARATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKRKLMKKDIFNILQ LE
Subjt: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Query: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
SRERQ LVLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| A0A5A7VCX9 RNA polymerase sigma factor sigC | 1.4e-267 | 92.05 | Show/hide |
Query: SKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILM
+KGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTS +DLLNLEEIEMNSGAKSL +HYGIKST PSKVEDNFSS TS+PTGKASPFGILM
Subjt: SKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILM
Query: ENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIA
ENLDVLEETF ESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHD S LP+E GEDHNVNQKTNDQN +VTVYS K+AGRRSVKKRAMDNADK+A
Subjt: ENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIA
Query: SRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRST
SR L TRAVKEKIH ST+FSRKKSSNSSKRRL+VA NEAEMSTG+KVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG FCRDELLRST
Subjt: SRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRST
Query: NSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIA
NSLV+FLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFR STYIQYWIRKSMSRVVARNSRGIQIP SLTKAINQIQKARKVLN GRRYSDDDIA
Subjt: NSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIA
Query: RATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISK
RATGLPLAKVRVASNCLKVVGS DQKMGDG+NMKYMEFTAD SIQSPEETVKR+LMKKDIFNILQ LESRERQ LVLRYGL+DF+PKSLEEIGKLLH+SK
Subjt: RATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISK
Query: EWVRKIEKKAMTKLKNEETVKHLSHYLD
EWVRKIEKKAMTKLKNEETVK+LSHYLD
Subjt: EWVRKIEKKAMTKLKNEETVKHLSHYLD
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| A0A6J1HEX7 RNA polymerase sigma factor sigC-like | 3.7e-257 | 83.81 | Show/hide |
Query: MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLE--EIEMNSGAKSLGPMH
MGTSFRPNL+W FQIQTHS + SPSKLSP+ASKGREA+FNSGRLSFFSS CEEGE+I RE LKTYTCLSEAPQT A+ LL+LE EIE+NSGAKSLG +
Subjt: MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLE--EIEMNSGAKSLGPMH
Query: YGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDSSGLPIEGGEDHNVNQ
YG K++GPSKVEDNF SCTSLPTG+ASPFG+LMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF D S LPIE G DHNVNQ
Subjt: YGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDSSGLPIEGGEDHNVNQ
Query: KTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIA
KT+DQNDN+ VYS K+AGRRSVK+RAMDNADK+ASR L TRA KEK SRKK+SNS KRR IVA NEAEMSTGVKVVANLERIRET EKESGR A
Subjt: KTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIA
Query: SMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRG
SMSCWA+AAS+DIKDLQKQLQFG FC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFR STYIQYWIRKSMSRVVAR+SRG
Subjt: SMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRG
Query: IQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQR
IQIP SLTKAINQIQKARK LN+SGRRYSDDDIA+ATGLPLAKVRVASNCLKVVGS DQK+GDG+NMKYME TAD SI+SPE+TVKR+LMKKDIFN+L+
Subjt: IQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQR
Query: LESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
LESRERQ LVLRYGL+D +PKSLEEIGKLL +SKEWVRKIE+KA TKLKNEETV++LSHYLD
Subjt: LESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| A0A6J1KA34 RNA polymerase sigma factor sigC-like isoform X2 | 4.8e-257 | 83.39 | Show/hide |
Query: MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYG
MGTSFRPNL+W FQIQTHS + SPSKLSP+ASKGREA+FNSGRLSFFSS CEEGE+I RE LKTYTCLSEAPQT A+ LL+LEE E+NSGAKSL +HYG
Subjt: MGTSFRPNLRWGFQIQTHSLKNSPSKLSPHASKGREAAFNSGRLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYG
Query: IKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDSSGLPIEGGEDHNVNQKT
K++GPSKVEDNF SCTSLPTG+ASPF +LMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFN CLSRTLK +SSF D S LPIE G DHNVNQKT
Subjt: IKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLK-TSSFHDSSGLPIEGGEDHNVNQKT
Query: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
+DQN N+ VYS K+AGRRSVK+RAMDNADK+ASR L TRA KEK SRKK+SNS KRR IVA NEAEMSTGVKVVANLERIRETLEKESGR ASM
Subjt: NDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASM
Query: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
SCWA+A+S+DIKDLQKQLQFG FC+DELLRSTNSLV+FLAKKYRCSGLPMEDLVQAGA+GVLQGVERFDPKRGFR STYIQYWIRKSMSRVVAR+SRGIQ
Subjt: SCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQ
Query: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
IP SLTKAINQIQKARK LN+SGRRYSDDD+A+ATGLPLAKVRVASNCLKVVGS DQK+GDG+NMKYME TAD SI+SPE+TVKR+LMKKDIFN+L+ LE
Subjt: IPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLE
Query: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
SRERQ LVLRYGL+D +PKSLEEIGKLL +SKEWVRKIE+KA TKLKNEETV++LSHYLD
Subjt: SRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| SwissProt top hits | e value | %identity | Alignment |
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| O22056 RNA polymerase sigma factor sigB | 4.5e-50 | 30.5 | Show/hide |
Query: NTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDN------ADKIASRLLTTRAVKEKI-HRSTVFSRKKSSNSS
N +S + S+ + S +E + V + ++ V S ++ R++ + + ++ + K S R V +++ H + + +++SS
Subjt: NTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDN------ADKIASRLLTTRAVKEKI-HRSTVFSRKKSSNSS
Query: KRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG
K L+ E E+S G++ + LER++ L + SGR + + WA AA VD K L++++ G+ C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G
Subjt: KRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG
Query: VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKM
+++G E+FD +GF+ STY +WI++++ + ++ SR I++P + +A ++++ARK L + +G+ +++IA ATGL + ++ K S DQK+
Subjt: VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKM
Query: GDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL
G N+K E AD + E+ + ++ M++D+ +L L +RE+Q + R+G+ D K+L+EIG+++ +S+E VR+IE A KLKN++ HL YL
Subjt: GDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL
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| O24621 RNA polymerase sigma factor sigC | 2.8e-105 | 44.06 | Show/hide |
Query: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFT
R SF SS+ EE ++LK C S +P T+ N++ +E+ +++ G E ++SS + L + +L +NL LEETF
Subjt: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFT
Query: ESGMLSLERDIVLQLTKLGALEFFNTCLSR---TLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA
+ +ERDI+LQ+ KLGA E F TCLSR + TS D++ L V+ N Q + KK RRS +N D+ +S + R
Subjt: ESGMLSLERDIVLQLTKLGALEFFNTCLSR---TLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA
Query: VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLA
I V ++ K+R ++ NE EMSTGVK+VA++ERIR LE+ESG++AS+SCWA AA ++ K L + L +G +CRDEL++ST SLV+FLA
Subjt: VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLA
Query: KKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL--NHSGRRYSDDDIARATGLP
+ YR G+ EDL+QAG +GVLQG ERFD RG++ STY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L +H + +D++IA+ TG
Subjt: KKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL--NHSGRRYSDDDIARATGLP
Query: LAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKI
+ K+R A+ CLKVVGS D+K+GD K++EFT D +++SPEE V R+ ++DI ++L+ LE RE+Q +VLRYGL D+ PKSLEEIGKLL +SKEW+RKI
Subjt: LAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKI
Query: EKKAMTKLKNEETVKHLSHYLD
E++AM KL+++ + L +YL+
Subjt: EKKAMTKLKNEETVKHLSHYLD
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| P26683 RNA polymerase sigma factor SigA | 1.2e-42 | 32.3 | Show/hide |
Query: RAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVF
R +K H + R + RL+ A E E++ + + LER+RE L ++ R S WAEA + + + +L G +D++++S LVV
Subjt: RAVKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVF
Query: LAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHS-GRRYSDDDIARATGL
+AKKY GL +DL+Q G+LG+++ E+FD ++G++ STY +WIR++++R +A SR I++P L + I++I+K K+L+ GR+ ++++IA +
Subjt: LAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHS-GRRYSDDDIARATGL
Query: PLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRK
+ K+R + ++ S + +G + + +F + ++PE+ V + L+++D+ +L L RER L LRYGL D K+LEEIG++ ++++E +R+
Subjt: PLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRK
Query: IEKKAMTKLKNEETVKHLSHYL
IE KA+ KL++ L Y+
Subjt: IEKKAMTKLKNEETVKHLSHYL
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| P38023 RNA polymerase sigma factor SigA1 | 4.5e-42 | 31.27 | Show/hide |
Query: AMDNADKIASRLLTTRAVKEKIHRSTVFS--RKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG
A+D+ D + K K+ ++ R + RL+ A E E++ + + LERIR+ L ++ R+ S + WA A + + +++L G
Subjt: AMDNADKIASRLLTTRAVKEKIHRSTVFS--RKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFG
Query: SFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNH
+D++++S LVV +AKKY GL +DL+Q G+LG+++ E+FD ++G++ STY +WIR++++R +A SR I++P L + I++I+K K+L+
Subjt: SFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNH
Query: S-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKS
GR+ ++++IA + + K+R + ++ S + +G + + +F + ++PE+ V + L+++D+ +L L RER L LRYGL D K+
Subjt: S-GRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKS
Query: LEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL
LEEIG+L ++++E +R+IE KA+ KL++ L Y+
Subjt: LEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL
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| Q03066 RNA polymerase sigma-C factor | 2.1e-39 | 35.91 | Show/hide |
Query: WAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIP
WAE A + +++L+K G ++ ++++ LVV +AKKY+ GL + DLVQ G LG+ + VE+FDP +G+R STY +WIR+ ++R +A +SR I++P
Subjt: WAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIP
Query: RSLTKAINQIQKA-RKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLES
+T+ +N+I+KA RK+ GR + +D+A + +VR + S + K+G + + E + +PEE + R+ +++D+ ++L L S
Subjt: RSLTKAINQIQKA-RKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLES
Query: RERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
RER +++R+GL D P SL EIG+ L +S+E VR+IE KA+ KL+ + + YL+
Subjt: RERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 3.2e-51 | 30.5 | Show/hide |
Query: NTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDN------ADKIASRLLTTRAVKEKI-HRSTVFSRKKSSNSS
N +S + S+ + S +E + V + ++ V S ++ R++ + + ++ + K S R V +++ H + + +++SS
Subjt: NTCLSRTLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDN------ADKIASRLLTTRAVKEKI-HRSTVFSRKKSSNSS
Query: KRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG
K L+ E E+S G++ + LER++ L + SGR + + WA AA VD K L++++ G+ C+D++++S LV+ +AK Y+ +G+ ++DLVQ G G
Subjt: KRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALG
Query: VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKM
+++G E+FD +GF+ STY +WI++++ + ++ SR I++P + +A ++++ARK L + +G+ +++IA ATGL + ++ K S DQK+
Subjt: VLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL-NHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKM
Query: GDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL
G N+K E AD + E+ + ++ M++D+ +L L +RE+Q + R+G+ D K+L+EIG+++ +S+E VR+IE A KLKN++ HL YL
Subjt: GDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYL
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| AT1G64860.1 sigma factor A | 7.1e-27 | 30.31 | Show/hide |
Query: INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVER
+ +S +K L+ + L+ G S A + + +LQ L R++L S LV+ +A++Y G M DLVQ G +G+L+G+E+
Subjt: INEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQGVER
Query: FDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVN---
FD +GFRISTY+ +WIR+ +SR + NSR +++P L + + I+ A+ L G S D IA + + KVR A+ + V S D+ +N
Subjt: FDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVN---
Query: -MKYMEFTADMSIQ-SPEETVKRKLMKKDIFNILQ-RLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKN
+ + AD ++ +P +K+++ ++ L RE++ + L YGL D E + E+I K + +S+E VR++ A+ KLK+
Subjt: -MKYMEFTADMSIQ-SPEETVKRKLMKKDIFNILQ-RLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKN
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| AT2G36990.1 RNApolymerase sigma-subunit F | 3.3e-40 | 30.67 | Show/hide |
Query: RRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV
++L+ A EAE+ + ++ + LE+++ LE ++G ++ WAEA + L+ + G R++L+ + LVV +AK+Y+ GL +DL+Q G++G+
Subjt: RRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGV
Query: LQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGR-RYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMG
++ VE+F P+ G R +TY +WIR+S+ + + +NSR I++P ++ + ++ +ARK G R S +++A G+ K+ + S Q +
Subjt: LQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGR-RYSDDDIARATGLPLAKVRVASNCLKVVGSNDQKMG
Query: DGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
+ + E T D I++P +V ++LM+ + N+L L +ER+ + LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y D
Subjt: DGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKHLSHYLD
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| AT3G53920.1 RNApolymerase sigma-subunit C | 2.0e-106 | 44.06 | Show/hide |
Query: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFT
R SF SS+ EE ++LK C S +P T+ N++ +E+ +++ G E ++SS + L + +L +NL LEETF
Subjt: RLSFFSSICEEGESIPRETLKTYTCLSEAPQTSANDLLNLEEIEMNSGAKSLGPMHYGIKSTGPSKVEDNFSSCTSLPTGKASPFGILMENLDVLEETFT
Query: ESGMLSLERDIVLQLTKLGALEFFNTCLSR---TLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA
+ +ERDI+LQ+ KLGA E F TCLSR + TS D++ L V+ N Q + KK RRS +N D+ +S + R
Subjt: ESGMLSLERDIVLQLTKLGALEFFNTCLSR---TLKTSSFHDSSGLPIEGGEDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRA
Query: VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLA
I V ++ K+R ++ NE EMSTGVK+VA++ERIR LE+ESG++AS+SCWA AA ++ K L + L +G +CRDEL++ST SLV+FLA
Subjt: VKEKIHRSTVFSRKKSSNSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLA
Query: KKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL--NHSGRRYSDDDIARATGLP
+ YR G+ EDL+QAG +GVLQG ERFD RG++ STY+QYWIRKSMS +V+R++RG+ IP S+ + IN IQKARK L +H + +D++IA+ TG
Subjt: KKYRCSGLPMEDLVQAGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVL--NHSGRRYSDDDIARATGLP
Query: LAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKI
+ K+R A+ CLKVVGS D+K+GD K++EFT D +++SPEE V R+ ++DI ++L+ LE RE+Q +VLRYGL D+ PKSLEEIGKLL +SKEW+RKI
Subjt: LAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKI
Query: EKKAMTKLKNEETVKHLSHYLD
E++AM KL+++ + L +YL+
Subjt: EKKAMTKLKNEETVKHLSHYLD
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| AT5G13730.1 sigma factor 4 | 6.0e-34 | 32.57 | Show/hide |
Query: SSKRRLIVAINEAEMSTGVKVVANLERIRETLEKE---SGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQ
+S+ + + E ++ +K A LE + ++E+ S +AS + ++ +I +K+ R+++ R LVV +A Y+ GL ++DL+Q
Subjt: SSKRRLIVAINEAEMSTGVKVVANLERIRETLEKE---SGRIASMSCWAEAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQ
Query: AGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRY-SDDDIARATGLPLAKVRVASNCLKVVGS
G++G+L+G ERFDP RG+++STY+ +WI++++ R +A SR +++P S+ + ++ +A VL RR S ++IA L ++ VR+A + S
Subjt: AGALGVLQGVERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGRRY-SDDDIARATGLPLAKVRVASNCLKVVGS
Query: NDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKH
D+ M E PEE VKR+ MK +I +L L +RE + L L +GL P S EEIGK L +S+E VR+I A+ KL+N V
Subjt: NDQKMGDGVNMKYMEFTADMSIQSPEETVKRKLMKKDIFNILQRLESRERQGLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAMTKLKNEETVKH
Query: LSHY
L Y
Subjt: LSHY
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