CuGenDBv2

Gene ID	CSPI02G22560
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Genome location	Chr2:19653595..19655354
RNA-Seq Expression	CSPI02G22560
Synteny	CSPI02G22560
Gene Ontology terms	GO:0006488 - dolichol-linked oligosaccharide biosynthetic process (biological process) GO:0007034 - vacuolar transport (biological process) GO:0015074 - DNA integration (biological process) GO:0005768 - endosome (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR001584 - Integrase, catalytic core IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0025132.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.1e-126

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LPS AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.0e-126

74.65

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LP+ AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.4e-126

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LPS AAIHP+FHVSQLKKA+G+  +   + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

7.0e-126

74.65

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LP+ AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

3.1e-126

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LPS AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SIV7 Ty3/gypsy retrotransposon protein

1.5e-126

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LPS AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

A0A5A7U2S1 Ty3/gypsy retrotransposon protein

3.4e-126

74.65

Show/hide

Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LP+ AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

A0A5A7U6J3 Ty3/gypsy retrotransposon protein

2.6e-126

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LPS AAIHP+FHVSQLKKA+G+  +   + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

A0A5D3CXB1 Ty3/gypsy retrotransposon protein

3.4e-126

74.65

Show/hide

Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LP+ AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

A0A5D3DI73 Ty3/gypsy retrotransposon protein

1.5e-126

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-
        MD I+GLPK+   EVI VVVDRLSKY HFL +KHPYTAKTV  VFVKEVV+LHG+P+SIVSDRD++FIS+FW+E+F+LA TKL+RSS+YHPQTDGQTEV 
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEV-

Query:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR
           VEAYLRCFCGE+P++W+ WLHWAE+W+NTTYH S+G+TPFQAVYGRLPPPL  YG+METPNSTLDQQL+DRD+VLG LKEHL +AQE+M ++ADLKR
Subjt:  ---VEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKR

Query:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP
        RD+EF  GD VFLKLRPYRQTSLRKKRNEKLSPKYF PYKI+E+IG VAYKL+LPS AAIHP+FHVSQLKKA+G+  ++  + P
Subjt:  RDMEFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

SwissProt top hits

e value

%identity

Alignment

P0CT34 Transposon Tf2-1 polyprotein

2.1e-32

33.33

Show/hide

Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--
        MD I  LP+++ +  +FVVVDR SK    +      TA+    +F + V+   G P+ I++D D +F S  W +     +  +  S  Y PQTDGQTE  
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--

Query:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL
           VE  LRC C   P  W + +   +  +N   HS+  MTPF+ V+ R  P L+    +E P  +   D+  ++   V   +KEHL     +M +Y D+
Subjt:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL

Query:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK
        K +++ EF  GDLV +K     +T    K N KL+P +  P+ +++K G   Y+L LP +        FHVS L+K
Subjt:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK

P0CT35 Transposon Tf2-2 polyprotein

2.1e-32

33.33

Show/hide

Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--
        MD I  LP+++ +  +FVVVDR SK    +      TA+    +F + V+   G P+ I++D D +F S  W +     +  +  S  Y PQTDGQTE  
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--

Query:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL
           VE  LRC C   P  W + +   +  +N   HS+  MTPF+ V+ R  P L+    +E P  +   D+  ++   V   +KEHL     +M +Y D+
Subjt:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL

Query:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK
        K +++ EF  GDLV +K     +T    K N KL+P +  P+ +++K G   Y+L LP +        FHVS L+K
Subjt:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK

P0CT36 Transposon Tf2-3 polyprotein

2.1e-32

33.33

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--
        MD I  LP+++ +  +FVVVDR SK    +      TA+    +F + V+   G P+ I++D D +F S  W +     +  +  S  Y PQTDGQTE  
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--

Query:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL
           VE  LRC C   P  W + +   +  +N   HS+  MTPF+ V+ R  P L+    +E P  +   D+  ++   V   +KEHL     +M +Y D+
Subjt:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL

Query:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK
        K +++ EF  GDLV +K     +T    K N KL+P +  P+ +++K G   Y+L LP +        FHVS L+K
Subjt:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK

P0CT41 Transposon Tf2-12 polyprotein

2.1e-32

33.33

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--
        MD I  LP+++ +  +FVVVDR SK    +      TA+    +F + V+   G P+ I++D D +F S  W +     +  +  S  Y PQTDGQTE  
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--

Query:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL
           VE  LRC C   P  W + +   +  +N   HS+  MTPF+ V+ R  P L+    +E P  +   D+  ++   V   +KEHL     +M +Y D+
Subjt:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL

Query:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK
        K +++ EF  GDLV +K     +T    K N KL+P +  P+ +++K G   Y+L LP +        FHVS L+K
Subjt:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK

Q9UR07 Transposon Tf2-11 polyprotein

2.1e-32

33.33

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Query:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--
        MD I  LP+++ +  +FVVVDR SK    +      TA+    +F + V+   G P+ I++D D +F S  W +     +  +  S  Y PQTDGQTE  
Subjt:  MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTE--

Query:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL
           VE  LRC C   P  W + +   +  +N   HS+  MTPF+ V+ R  P L+    +E P  +   D+  ++   V   +KEHL     +M +Y D+
Subjt:  --VVEAYLRCFCGERPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETP--NSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADL

Query:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK
        K +++ EF  GDLV +K     +T    K N KL+P +  P+ +++K G   Y+L LP +        FHVS L+K
Subjt:  KRRDM-EFGVGDLVFLKLRPYRQTSLRKKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTA--AIHPIFHVSQLKK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATGTTATAGATGGGTTACCTAAGGCTGCTAGACATGAAGTTATCTTTGTGGTGGTGGATAGACTAAGTAAATATACTCACTTTCTGGCCATCAAACATCCTTATAC
AGCTAAAACAGTGGTTGCAGTTTTTGTGAAAGAGGTGGTAAAGTTACATGGATATCCACGATCTATTGTGTCTGATCGGGATAGGGTATTTATCAGCAATTTCTGGAACG
AGTTGTTTCAACTAGCTAGTACTAAACTCCACAGAAGTTCAGCTTATCATCCACAAACAGATGGACAGACTGAAGTTGTGGAAGCATATCTTCGCTGTTTTTGTGGAGAA
AGACCGAAAGAGTGGACCAATTGGCTGCACTGGGCAGAGTTTTGGCATAACACAACATATCACAGCTCACTTGGTATGACTCCTTTCCAAGCAGTGTATGGACGACTACC
ACCACCATTAACATATTATGGTGATATGGAAACGCCTAATTCCACTTTAGATCAGCAGCTGAAGGATAGAGATATTGTTTTGGGAGTCTTGAAGGAACATCTCATCATTG
CGCAAGAACAGATGAATCGGTATGCCGATTTGAAGAGAAGGGATATGGAGTTTGGAGTGGGAGATCTGGTTTTCCTCAAACTTAGACCATACAGACAAACTTCTTTAAGA
AAGAAAAGGAACGAGAAGTTATCTCCTAAATATTTCAGGCCATACAAAATTATTGAGAAAATTGGAGCAGTAGCTTATAAACTCAAACTTCCATCCACTGCTGCAATTCA
CCCAATATTTCATGTGTCTCAATTGAAGAAGGCGGTAGGTGATCATATGCAAGTGCATCAAATAGTGCCTTAA

mRNA sequence

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AGGGGTTACAGTTACAAGGGAGTTAAATCGATGCGAAGGGGAATAGAGAAGGAGGTGTTCTGTGTTCTGGTTTGGTTTTTAGTATTTTGTTTGGTGTGTTGTTTTTGGTA
TTTTGGATTAGGAGGTTTATTTTGCTTGTTGACTGTAACGTGACTCATTCTCTGAAATTCACGATTTTTGTTTTATATTGTAAGTTGTGTTTGAATTATCAAATTTGTGC
GGAATCTTTGATTTGTCAAATAAATAAATCATTGACTCTTTCACCAGCAGAGTTGCTAATTCCATTAGAAATTCCTGATACTATATGGAGTGATGTTTCTATGGATGTTA
TAGATGGGTTACCTAAGGCTGCTAGACATGAAGTTATCTTTGTGGTGGTGGATAGACTAAGTAAATATACTCACTTTCTGGCCATCAAACATCCTTATACAGCTAAAACA
GTGGTTGCAGTTTTTGTGAAAGAGGTGGTAAAGTTACATGGATATCCACGATCTATTGTGTCTGATCGGGATAGGGTATTTATCAGCAATTTCTGGAACGAGTTGTTTCA
ACTAGCTAGTACTAAACTCCACAGAAGTTCAGCTTATCATCCACAAACAGATGGACAGACTGAAGTTGTGGAAGCATATCTTCGCTGTTTTTGTGGAGAAAGACCGAAAG
AGTGGACCAATTGGCTGCACTGGGCAGAGTTTTGGCATAACACAACATATCACAGCTCACTTGGTATGACTCCTTTCCAAGCAGTGTATGGACGACTACCACCACCATTA
ACATATTATGGTGATATGGAAACGCCTAATTCCACTTTAGATCAGCAGCTGAAGGATAGAGATATTGTTTTGGGAGTCTTGAAGGAACATCTCATCATTGCGCAAGAACA
GATGAATCGGTATGCCGATTTGAAGAGAAGGGATATGGAGTTTGGAGTGGGAGATCTGGTTTTCCTCAAACTTAGACCATACAGACAAACTTCTTTAAGAAAGAAAAGGA
ACGAGAAGTTATCTCCTAAATATTTCAGGCCATACAAAATTATTGAGAAAATTGGAGCAGTAGCTTATAAACTCAAACTTCCATCCACTGCTGCAATTCACCCAATATTT
CATGTGTCTCAATTGAAGAAGGCGGTAGGTGATCATATGCAAGTGCATCAAATAGTGCCTTAAATGAAAATCGCGAATGGATGACATCACTGGAAGAAGTATATGGATGA
CATCATATTGAGAAGTCTTAATTGGCTGGAAGGGGTTGCCACCACACAAAGCTACATGGGAACTATGCACTGATTTTCAACAGCAATTCCCTGACTTCACCTTGAGGACA
AGGTGGATTTGGAGGAGGAGAGTAGTGTTAGACCACCACTGTTATTTACTTATAATAGAAGAAAGGAAAATAAATCACGTGAGGTACCAACAGTTAATTAAAAATTAAAA
GAGGAAGTTAAGAAGAGGAAAGAAGGGGATACAGTTACTTGGAAGACAGTTACTGGGAAGAGGGAGTTAAATCGATGAGAAGGGGAAAGGAGAAAGGGGGAGATTTTGAA
GTAAAAGAGGTCTGCAATACTCCTTGAAAGACGGGGGAAGCAAAAGGCTGGTGTTCTGTGTTTTGGTTTGGTTTTTAGTATTTTGTTTTGTGTGTTGTTTTTGATATTTT
GGATTAGGAGGTTTACTTTGCTTGTTGACTGTGAATTAACTGTAACGTGACTCATTCTGAGGTTCACAATTTTTGTTTTATATTGTAAGTGTTTGAATTATCAATATAAC

Protein sequence

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MDVIDGLPKAARHEVIFVVVDRLSKYTHFLAIKHPYTAKTVVAVFVKEVVKLHGYPRSIVSDRDRVFISNFWNELFQLASTKLHRSSAYHPQTDGQTEVVEAYLRCFCGE
RPKEWTNWLHWAEFWHNTTYHSSLGMTPFQAVYGRLPPPLTYYGDMETPNSTLDQQLKDRDIVLGVLKEHLIIAQEQMNRYADLKRRDMEFGVGDLVFLKLRPYRQTSLR
KKRNEKLSPKYFRPYKIIEKIGAVAYKLKLPSTAAIHPIFHVSQLKKAVGDHMQVHQIVP

CSPI02G22560 (gene) of Cucumber (PI 183967) v1 genome