; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G22650 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G22650
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibonuclease H2 subunit B
Genome locationChr2:19697561..19702243
RNA-Seq ExpressionCSPI02G22650
SyntenyCSPI02G22650
Gene Ontology termsGO:0000455 - enzyme-directed rRNA pseudouridine synthesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0032299 - ribonuclease H2 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0009982 - pseudouridine synthase activity (molecular function)
InterPro domainsIPR019024 - Ribonuclease H2 subunit B, wHTH domain
IPR040456 - Ribonuclease H2 subunit B
IPR041195 - Rnh202, triple barrel domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN63094.2 hypothetical protein Csa_022251 [Cucumis sativus]1.3e-15998.93Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYV EDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
         GKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKET+CDAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

XP_004138774.1 ribonuclease H2 subunit B isoform X1 [Cucumis sativus]1.3e-15998.93Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYV EDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
         GKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKET+CDAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

XP_008445067.1 PREDICTED: ribonuclease H2 subunit B isoform X1 [Cucumis melo]8.5e-14893.95Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAW EGVEE RILIAPDHGVKE  TGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLL LAEK MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEKET+ DAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSE+APTSIEN FDSISQDK    S S AKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

XP_008445068.1 PREDICTED: ribonuclease H2 subunit B isoform X3 [Cucumis melo]8.5e-14893.95Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAW EGVEE RILIAPDHGVKE  TGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLL LAEK MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEKET+ DAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSE+APTSIEN FDSISQDK    S S AKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

XP_031736471.1 ribonuclease H2 subunit B isoform X2 [Cucumis sativus]1.5e-15798.58Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYV EDGRLYSATPVDPVFIFLPIFEEARM KGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
         GKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKET+CDAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

TrEMBL top hitse value%identityAlignment
A0A0A0LPA1 Ribonuclease H2 subunit B6.1e-16098.93Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYV EDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
         GKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKET+CDAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A1S3BBT5 Ribonuclease H2 subunit B4.1e-14893.95Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAW EGVEE RILIAPDHGVKE  TGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLL LAEK MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEKET+ DAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSE+APTSIEN FDSISQDK    S S AKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A1S3BCJ9 Ribonuclease H2 subunit B4.1e-14893.95Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAW EGVEE RILIAPDHGVKE  TGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLL LAEK MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEKET+ DAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSE+APTSIEN FDSISQDK    S S AKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A1S4DVB3 Ribonuclease H2 subunit B5.0e-14693.59Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAW EGVEE RILIAPDHGVKE  TGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARM KGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYPGYLHLL LAEK MQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEKET+ DAVSILGEYLKDQPWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
        KLLCDHLKLNFAEATRKASDSE+APTSIEN FDSISQDK    S S AKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR

A0A6J1HFF3 Ribonuclease H2 subunit B6.2e-14490.71Show/hide
Query:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
        MAW EGVEETRILIAPDHGVKEN TGC LSLRHPKSGN TCFLYVNE+LEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD
Subjt:  MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDD

Query:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL
        PGKFRQLDDIMFINGYP YLHLL +AEK MQVVCEVKEVGSS+FFRLDDSKVLAWLYHKVCQLK+TLCTLDKNYAAREEK+T+ DAVSILGEYLKD+PWL
Subjt:  PGKFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWL

Query:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK
        KLLCDHLKLNFAEATRKASD+E+ P SIENNFDSISQDK    + SGAKNTRNGKQAKKPKVETESRNIKDMFSKA KRK
Subjt:  KLLCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK

SwissProt top hitse value%identityAlignment
Q28GD9 Ribonuclease H2 subunit B1.1e-1732.52Show/hide
Query:  GVEETRILIAP----DHGVKENVTGCFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        G  E  +L+AP    D     +    F  LR P +   + FL+++  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+ L       +K   
Subjt:  GVEETRILIAP----DHGVKENVTGCFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPGYLHLLPL--AEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV
        + GKF+ ++ I+    +P    LL      K +  V E KE+GS +F++    K L WL  KV
Subjt:  DPGKFRQLDDIMFINGYPGYLHLLPL--AEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKV

Q3ZBI3 Ribonuclease H2 subunit B3.5e-1930.81Show/hide
Query:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHL--L
        F+ L +P SG  T +L+      L EI  FK+   SWF+ + V   G L+ ATPVDP+F+ L    +A   K    GKF+ LD ++  + +P  + L  L
Subjt:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHL--L

Query:  PLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS
        P  EK +Q V E KEV   ++++    K L WL  KV Q    L T   N +AR +         +  +  KD+ +++    L+ D++    ++   K  
Subjt:  PLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS

Query:  DSERAPTSIEN
             P S+ N
Subjt:  DSERAPTSIEN

Q5HZP1 Ribonuclease H2 subunit B5.4e-2034.5Show/hide
Query:  GVEETRILIAPD--HGVKENVTG--CFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD
        G  E  +L+AP+   G  +N++    F+ LR P +     FL++N  + + E+  F + Y SWF+G  V +DGRL  ATP+DP+F+ LP      +K   
Subjt:  GVEETRILIAPD--HGVKENVTG--CFLSLRHPKSGNPTCFLYVN--EMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGD

Query:  DPGKFRQLDDIMFINGYPG---YLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTL
        + GKF+ ++ I+    +P     L   P+A K +  V E KE+GS +F +    K L WL  KV Q  + L
Subjt:  DPGKFRQLDDIMFINGYPG---YLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTL

Q5TBB1 Ribonuclease H2 subunit B4.7e-1633.76Show/hide
Query:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHL--L
        F+ L +P SG    +L+    + L E+  FK+ + SWF+   V   G L+ ATPVDP+F+ L       + K D  GKF+ LD ++  N +P  + L  L
Subjt:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHL--L

Query:  PLAEKFMQVVCEVK---EVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAR
        P  EK +  V E K   E+ + ++++    K L WL  KV Q    L T + N ++R
Subjt:  PLAEKFMQVVCEVK---EVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAR

Q5XI96 Ribonuclease H2 subunit B2.1e-1628.44Show/hide
Query:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLL--
        F+ L +P SG    +L     + L EI  FK+ + SWF+   V   G L+ ATP+DP+F+ L       + K    GK++ LD ++  + +P    LL  
Subjt:  FLSLRHPKSGNPTCFLY--VNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDIMFINGYPGYLHLL--

Query:  PLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS
        P  EK ++ V E KEV S ++++    K L WL  KV Q    L     N  AR +       V +  +  K++ +++    L+ D++    ++   K  
Subjt:  PLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLK----LLCDHLKLNFAEATRKAS

Query:  DSERAPTSIEN
             P S+ N
Subjt:  DSERAPTSIEN

Arabidopsis top hitse value%identityAlignment
AT4G20325.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).5.6e-9761.87Show/hide
Query:  WCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPG
        W EG E+TR+LIAPD G   N  G  L+LRHPKS N TCFL+ NEML+E+ WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMKKG++ G
Subjt:  WCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPG

Query:  KFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLKL
        KFRQLD+I+F+ GYPGY HLL LAEK M++VC+ +EVGS +F+RLD+SKVLAWL  K+  LK +L  LDKNYAA++EK+T+ D+VSI+GEYLK +PWLKL
Subjt:  KFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLKL

Query:  LCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK
        L DHL L F + T K ++ E  PT+ ENN  S       S S     N + GKQ K+ KVET S+NI+DMFS+A K+K
Subjt:  LCDHLKLNFAEATRKASDSERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRK

AT4G20325.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease H2, subunit B (InterPro:IPR019024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).4.3e-6570.13Show/hide
Query:  WCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPG
        W EG E+TR+LIAPD G   N  G  L+LRHPKS N TCFL+ NEML+E+ WFKQSY SWFLGDY++EDG LY ATPVDPVFI LPIF+EARMKKG++ G
Subjt:  WCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPG

Query:  KFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWL
        KFRQLD+I+F+ GYPGY HLL LAEK M++VC+ +EVGS +F+RLD+SKVLAWL
Subjt:  KFRQLDDIMFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTGGTGCGAAGGCGTTGAGGAAACTCGTATCCTCATTGCTCCTGATCATGGGGTCAAAGAAAATGTTACTGGATGCTTTCTTTCACTTCGCCATCCAAAATCAGG
AAACCCAACATGTTTCCTATATGTAAATGAGATGTTAGAGGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGATGGCCGTC
TGTATTCTGCCACTCCAGTAGATCCTGTATTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAGGGGGATGATCCTGGGAAATTCAGGCAGTTAGATGACATA
ATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGCCCCTTGCAGAGAAGTTTATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTTTTTTAGGCT
CGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGCCAACTAAAAAGAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGAAACAATAT
GCGACGCCGTTTCAATTTTAGGGGAATACTTGAAGGATCAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAGCAACCAGAAAAGCATCGGAT
TCAGAAAGGGCTCCTACTAGTATAGAGAACAATTTTGATTCTATCTCACAGGATAAGAGTGGGAGTAGGAGTGGGAGTGGCGCAAAGAATACAAGAAATGGAAAGCAAGC
CAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCCGCAAAAAGAAAAAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTGGTGCGAAGGCGTTGAGGAAACTCGTATCCTCATTGCTCCTGATCATGGGGTCAAAGAAAATGTTACTGGATGCTTTCTTTCACTTCGCCATCCAAAATCAGG
AAACCCAACATGTTTCCTATATGTAAATGAGATGTTAGAGGAAATTCACTGGTTTAAGCAGTCATATTCATCGTGGTTTTTGGGAGACTATGTTACTGAAGATGGCCGTC
TGTATTCTGCCACTCCAGTAGATCCTGTATTCATTTTCTTGCCCATTTTTGAGGAAGCTAGAATGAAGAAGGGGGATGATCCTGGGAAATTCAGGCAGTTAGATGACATA
ATGTTCATCAATGGGTATCCTGGATATCTGCATTTACTGCCCCTTGCAGAGAAGTTTATGCAAGTAGTTTGTGAGGTCAAAGAAGTTGGATCATCTAGGTTTTTTAGGCT
CGATGATTCAAAGGTATTGGCATGGTTATATCACAAGGTATGCCAACTAAAAAGAACTCTATGCACACTGGATAAAAACTATGCTGCAAGGGAAGAAAAAGAAACAATAT
GCGACGCCGTTTCAATTTTAGGGGAATACTTGAAGGATCAACCTTGGTTGAAGCTTTTATGTGACCATCTCAAGTTAAATTTTGCTGAAGCAACCAGAAAAGCATCGGAT
TCAGAAAGGGCTCCTACTAGTATAGAGAACAATTTTGATTCTATCTCACAGGATAAGAGTGGGAGTAGGAGTGGGAGTGGCGCAAAGAATACAAGAAATGGAAAGCAAGC
CAAGAAGCCTAAGGTGGAGACAGAATCACGGAACATCAAGGACATGTTTTCAAAGGCCGCAAAAAGAAAAAGATGAAGCATTTGAGATATGCGATGATTTAAAAGCCAGC
AAATTAGATCCTCACTCTCTCATTTGTGCCACAGCAAGTCAATTTGGTAAATGAGGCAATCCATGGATGGAATGGTATACTTATCCAACTTACTAAAGGCAAAACTTTTA
GGACTATTTGTTTCTTTTAGCCATTTGAAAATATGTTTTTGATACCATCTTCTACTTGAAAATTTGAAATGCTTATATTGATGCAGGCAGAATTGGACTTCAAACCGAAT
TCACAAAGCATTTTTAGGCAGG
Protein sequenceShow/hide protein sequence
MAWCEGVEETRILIAPDHGVKENVTGCFLSLRHPKSGNPTCFLYVNEMLEEIHWFKQSYSSWFLGDYVTEDGRLYSATPVDPVFIFLPIFEEARMKKGDDPGKFRQLDDI
MFINGYPGYLHLLPLAEKFMQVVCEVKEVGSSRFFRLDDSKVLAWLYHKVCQLKRTLCTLDKNYAAREEKETICDAVSILGEYLKDQPWLKLLCDHLKLNFAEATRKASD
SERAPTSIENNFDSISQDKSGSRSGSGAKNTRNGKQAKKPKVETESRNIKDMFSKAAKRKR