CuGenDBv2

Gene ID	CSPI02G22850
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	selenoprotein H
Genome location	Chr2:19835864..19840930
RNA-Seq Expression	CSPI02G22850
Synteny	CSPI02G22850
Gene Ontology terms	GO:0005794 - Golgi apparatus (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652181.1 hypothetical protein Csa_022241 [Cucumis sativus]

1.7e-85

98.26

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKRTKNQEEDLVVEKPAPATSR+TRSSARL+ANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRS+DGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

XP_004138763.1 selenoprotein H [Cucumis sativus]

1.7e-85

98.26

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKRTKNQEEDLVVEKPAPATSR+TRSSARL+ANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRS+DGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

XP_008445096.1 PREDICTED: selenoprotein H [Cucumis melo]

1.2e-80

93.6

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKR+KNQEE+  +EKPAPATSRVTRSSARL+ANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGL K DKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRS+DG+KFISLLDMKRPFTRMKEL+MDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

XP_023546291.1 selenoprotein H-like [Cucurbita pepo subsp. pepo]

1.4e-63

76.4

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Query:  MAPRKRTKNQEEDLVV--EKPAPATSRVTRSSARLSANSKADL----TVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCK
        MAPRKR+KNQE ++V   EKPAP +S VTR S RL+ NSKADL     VTELPKSKK KRAPKENGK +EV N+  ++D    KL KDAK+RTVVIE CK
Subjt:  MAPRKRTKNQEEDLVV--EKPAPATSRVTRSSARLSANSKADL----TVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCK

Query:  QCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        QCQSFKKRAIQVQ+GLENGV GITVLLNP+KPR+GCFEIRS DGEKFISLLDMKRPFTRMKELNM+EVISD+IEKIKG
Subjt:  QCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

XP_038886764.1 selenoprotein H [Benincasa hispida]

6.3e-69

81.82

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADL----TVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQC
        MAPRKR+KNQE++   EK APA+SRVTRSSARL+ANSKAD      VTE  KSKKAKRAPKENGKV+EVEN+ V+VD  L KLDKD K+RTVVIEHCKQC
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADL----TVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        QSFKKRAIQVQ GLENGVPGITV+LNPD PRRGCFEIRS+DGEKFISLLDMKRPFTRMKEL+M+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LPC9 Uncharacterized protein

8.0e-86

98.26

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKRTKNQEEDLVVEKPAPATSR+TRSSARL+ANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRS+DGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

A0A1S3BBW1 selenoprotein H

5.9e-81

93.6

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK
        MAPRKR+KNQEE+  +EKPAPATSRVTRSSARL+ANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGL K DKDAKSRTVVIEHCKQCQSFK
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFK

Query:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRS+DG+KFISLLDMKRPFTRMKEL+MDEVISDIIEKIKG
Subjt:  KRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

A0A6J1GHF7 selenoprotein H-like isoform X1

1.9e-63

75.57

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTE----LPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQC
        MAP+KR+K QE++  V KP PA+SRVTR S RL+ NSKADLTV E    LPK KKAKR PKENGK EEVEN+   +D    KL  +AK+R VVIEHCKQC
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTE----LPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        QSFKKRA++VQ GLE GVPGITVLLNPDKPRRGCFEIRS+DGEKFISLLDMKRPFTRMKEL+M+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

A0A6J1K9R2 selenoprotein H-like

2.8e-62

75.42

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Query:  MAPRKRTKNQEED---LVVEKPAPATSRVTRSSARLSANSKADL----TVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHC
        MAPRKR+KNQE+       EKPAP +S VTR S RL+ NS ADL     VTELPKSKK KRAPKENGK +EV N+  ++D    KL KDAK+RTVVIE C
Subjt:  MAPRKRTKNQEED---LVVEKPAPATSRVTRSSARLSANSKADL----TVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHC

Query:  KQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        KQCQSFKKRAIQVQ+GLENGV GITVLLNP+KPR+GCFEIRS DGEKFISLLDMKRPFTRMKELNM+EVISDIIEKIKG
Subjt:  KQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

A0A6J1KP64 selenoprotein H-like isoform X1

3.1e-61

73.86

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Query:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTE----LPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQC
        MAP+KR+K QE++    KP P +SRVTR S RL+ANSKADLTV E    LPK KKAKRAPKEN K EEVEN+   +D    KL  +AK+R VVIEHCKQC
Subjt:  MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTE----LPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQC

Query:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG
        QSFKKRA++VQ GLE GVPGITVLLNPDK RRGCFEIRS+DGEKFISLLDMKRPFT+MKEL+M+EVISDIIEKIKG
Subjt:  QSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

SwissProt top hits

e value

%identity

Alignment

Q3UQA7 Selenoprotein H

1.0e-05

32.61

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Query:  KLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEI---RSKDGEKFISLLDMKRPFTRMKELNMDEVISDI
        K +K A+  TVVIEHC   + + + A  +   L+   P + V +NP KPRRG FE+   RS +    +     K P  ++K     EV+ ++
Subjt:  KLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEI---RSKDGEKFISLLDMKRPFTRMKELNMDEVISDI

Arabidopsis top hits

e value

%identity

Alignment

AT2G24440.1 selenium binding

4.1e-34

52.83

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Query:  RVTRSSARLSANSKADLTVTELPKSKKAKR-------APKENGKVEEV-----ENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN
        R TRS  +   +S + L   E P+ KK K        A K+  K EEV     + +E   D    + D D+  + +VIEHCKQC+SFK+RA +V+ GLE 
Subjt:  RVTRSSARLSANSKADLTVTELPKSKKAKR-------APKENGKVEEV-----ENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGLEN

Query:  GVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIK
         VPGI V +NPDKPRRGCFEIR + GE FISLL MKRPFT MKELNM+EVI+DI+EKIK
Subjt:  GVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIK

AT4G31360.1 selenium binding

4.6e-33

47.85

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Query:  PRKRTKNQEEDLVVEKPAPATSRVTRS------SARLSANSKADLTVTELPKSKKAKR--------APKENGKVEEVENKEVKVDVGLGKLDKDAKSRT-
        P K++K   E+        A+SRVTRS      S      +KA  + T+ P +KKAKR          K+  K EEVE  E  V+  + K + + +  T 
Subjt:  PRKRTKNQEEDLVVEKPAPATSRVTRS------SARLSANSKADLTVTELPKSKKAKR--------APKENGKVEEVENKEVKVDVGLGKLDKDAKSRT-

Query:  --VVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIK
          +VIEHCKQC +FK RAIQV+  LE  VPG+TV LNP+KPRRGCFEIR + G+ FISLL+MKRPF  MK L+M+EVI DII+K+K
Subjt:  --VVIEHCKQCQSFKKRAIQVQTGLENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIK

Sequences

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CDS sequence

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ATGGCGCCCAGGAAGCGAACCAAGAACCAAGAAGAAGACCTGGTGGTGGAGAAGCCGGCCCCGGCGACGTCCAGAGTGACTCGGAGTTCCGCTCGCCTGTCGGCGAACTC
CAAGGCCGATTTGACTGTCACGGAGTTGCCGAAGAGTAAGAAGGCGAAACGTGCTCCGAAGGAGAATGGGAAGGTTGAGGAGGTTGAAAATAAGGAAGTGAAAGTTGATG
TTGGTTTGGGGAAACTTGACAAGGATGCGAAGAGTAGAACGGTTGTGATTGAACATTGCAAACAGTGCCAATCATTCAAGAAAAGGGCCATTCAGGTGCAAACTGGTCTA
GAGAATGGTGTTCCTGGAATTACTGTGCTGCTTAACCCTGATAAGCCAAGAAGGGGTTGCTTTGAAATCCGAAGCAAAGATGGGGAGAAGTTTATCAGTCTTCTGGACAT
GAAGCGGCCATTTACCCGCATGAAGGAACTGAACATGGATGAAGTCATTTCAGATATCATTGAGAAGATAAAAGGATGA

mRNA sequence

Show/hide mRNA sequence

ATAAAAGGTAATAAGAAGAGGCGACGTGACAATAAATGATAGTGGAGACTGGCGCCATTTCTGGGACTTCGTGCCGCCACTTTCTTCCAAAGAAGAAACCAAGTGGAACC
GCGTGGGCGTCGTACCACCACCCAGTCAACGGCCTCGATCCCCTCTCACAGTCTAAATCCATCTCCACCGTTTCTTCAAATTCTCACCGCCGTCCCCTAGGGCGGGAAAA
CACCCACCCCCCGAACTCCGCTTCTGTATATCACTACAAACCAACGGTCACACCTTCGAAAACCCACCCATAACTTTACCTTCGTCCTCATACTTCCTCTTTTTTCTTTT
CCTTTCTACGGTTTCACTTCTCCTTTCATGGCGCCCAGGAAGCGAACCAAGAACCAAGAAGAAGACCTGGTGGTGGAGAAGCCGGCCCCGGCGACGTCCAGAGTGACTCG
GAGTTCCGCTCGCCTGTCGGCGAACTCCAAGGCCGATTTGACTGTCACGGAGTTGCCGAAGAGTAAGAAGGCGAAACGTGCTCCGAAGGAGAATGGGAAGGTTGAGGAGG
TTGAAAATAAGGAAGTGAAAGTTGATGTTGGTTTGGGGAAACTTGACAAGGATGCGAAGAGTAGAACGGTTGTGATTGAACATTGCAAACAGTGCCAATCATTCAAGAAA
AGGGCCATTCAGGTGCAAACTGGTCTAGAGAATGGTGTTCCTGGAATTACTGTGCTGCTTAACCCTGATAAGCCAAGAAGGGGTTGCTTTGAAATCCGAAGCAAAGATGG
GGAGAAGTTTATCAGTCTTCTGGACATGAAGCGGCCATTTACCCGCATGAAGGAACTGAACATGGATGAAGTCATTTCAGATATCATTGAGAAGATAAAAGGATGATGAA
GGGCTTTAATGAAAAATTGCCTTTCTAAGGATGCAATGGTTTTTTTTTGTGGTGGTTTGAAGCTAACCAACTAGAGTACCTTTGATGGTGGAAAACTTGCTAATGATCAT
TTGCCAATGTCAATATTGCCTCCTCGCTTGGGATAACTGCAATGGTAAAGCCATCAGGTTTGAACAAACATGGTGAAATATTTTTTTGGTTTAAGCTTCATAATGAACGA
GTCTATCTTTGAAGAAGACTTGTCCTTTGTATTAGTAGCAGTAGAAACCTACCCTTACCTAAGATGAGGGTGGCTCTATATTGCATCCTTGAATTGTGTATTTTTGTGTG
AATCAATAGAGTTTTATTTGCACCTTTTTTTTCTTGTATAAGAGATCTAAGCCAGAAAACTAGGAGAGATTCCTTTATCCCAACTATGTCCCTAAGGCAAGATAAGGATT
AGAGATGAGCATCGGTTGGTTTGCTTTGGTTTTGTGCTCAAATTGATTTCGAACATCAATTTGTTGATTTTAACGAGTCTTGGTTGTTGATTTTGGAAGGATCTATTGAA
CCAACTGGTCTACTGCATGGATGGTTGGTCAGTTGGTTTTAGTTAGTTGCTTATGGAACGAAACTTTGTTGGAGTTGAGAAGGAAAGGTAGTTATGGTGGTGTTGGCCTC
CAATGAAGAGACGATTGGGACACTTGAAGAAATGATTAATTTATTAATTAGTTTAAATAGGCATTTATTACCTATC

Protein sequence

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MAPRKRTKNQEEDLVVEKPAPATSRVTRSSARLSANSKADLTVTELPKSKKAKRAPKENGKVEEVENKEVKVDVGLGKLDKDAKSRTVVIEHCKQCQSFKKRAIQVQTGL
ENGVPGITVLLNPDKPRRGCFEIRSKDGEKFISLLDMKRPFTRMKELNMDEVISDIIEKIKG

CSPI02G22850 (gene) of Cucumber (PI 183967) v1 genome