; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G23800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G23800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L39
Genome locationChr2:20425006..20425929
RNA-Seq ExpressionCSPI02G23800
SyntenyCSPI02G23800
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652209.1 hypothetical protein Csa_022247, partial [Cucumis sativus]1.4e-22100Show/hide
Query:  GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
        GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
Subjt:  GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTI
KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]1.4e-22100Show/hide
Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]9.8e-2495Show/hide
Query:  VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        +AA CR SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  VAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2594.03Show/hide
Query:  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]1.4e-2594.03Show/hide
Query:  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
TrEMBL top hitse value%identityAlignment
A0A0A0LM35 Uncharacterized protein3.3e-33100Show/hide
Query:  GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  GFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A2P5ANB0 Ribosomal protein9.9e-2296.36Show/hide
Query:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        R +KMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  RISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A368RK84 Uncharacterized protein3.4e-2286.89Show/hide
Query:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L    CR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1HDM7 uncharacterized protein LOC1114629686.6e-2694.03Show/hide
Query:  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        C LFVAL AAG R SKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  CSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
K3YM29 Uncharacterized protein3.4e-2286.89Show/hide
Query:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        L    CR SKMPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  LVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-19.5e-2294.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51425 60S ribosomal protein L391.9e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51426 60S ribosomal protein L39-21.9e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q5SMI4 60S ribosomal protein L39-35.6e-2294.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q6KAJ8 60S ribosomal protein L39-11.9e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein7.7e-1997.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein2.2e-2190.2Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein6.8e-2394.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAATGGCATGAGGCCCATTTCAACTAGGCTTCAAAGTTTTGTTGAACGAGCTCGAAAAGGCCTTACGGATCAGCCCATTATTTATAAGTGGGCTCATTGGTTGTC
TAGAATCGAGCAACATTGTTTTAGCGGTCCACATAAAAAGGGTTTCCGTTCCTTTTGTTCGCTGTTCGTGGCCCTCGTCGCTGCCGGTTGCCGAATCTCCAAGATGCCGT
CTCACAAGACCTTCAGAATCAAAAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGGACCGATAATACCATCAGGTACAATGCG
AAGCGAAGGCACTGGCGCCGCACTAAACTCGGATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAATGGCATGAGGCCCATTTCAACTAGGCTTCAAAGTTTTGTTGAACGAGCTCGAAAAGGCCTTACGGATCAGCCCATTATTTATAAGTGGGCTCATTGGTTGTC
TAGAATCGAGCAACATTGTTTTAGCGGTCCACATAAAAAGGGTTTCCGTTCCTTTTGTTCGCTGTTCGTGGCCCTCGTCGCTGCCGGTTGCCGAATCTCCAAGATGCCGT
CTCACAAGACCTTCAGAATCAAAAAGAAGTTGGCGAAGAAGATGAGACAGAACAGGCCTATTCCTCACTGGATCCGTCTTAGGACCGATAATACCATCAGGTACAATGCG
AAGCGAAGGCACTGGCGCCGCACTAAACTCGGATTCTGA
Protein sequenceShow/hide protein sequence
MDNGMRPISTRLQSFVERARKGLTDQPIIYKWAHWLSRIEQHCFSGPHKKGFRSFCSLFVALVAAGCRISKMPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNA
KRRHWRRTKLGF