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CSPI02G24020 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G24020
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal protein S19
Genome locationChr2:20612163..20612976
RNA-Seq ExpressionCSPI02G24020
SyntenyCSPI02G24020
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002222 - Ribosomal protein S19/S15
IPR005732 - Ribosomal protein S19, bacterial-type
IPR020934 - Ribosomal protein S19 conserved site
IPR023575 - Ribosomal protein S19/S15, superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064877.1 ribosomal protein S19 [Cucumis melo var. makuwa]1.9e-4393.62Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK
        MSPRSIWKGGFVDAFL KMKKNVEPLMN+KIWSRGSMILPEFVGSTVRVYNGKNF+RCKITE RVGHKFGEFAMTRKR+IARSNSAP KRGGKK
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK

KAE8652214.1 hypothetical protein Csa_022320 [Cucumis sativus]2.8e-42100Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAP
        MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAP
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAP

YP_003587264.1 ribosomal protein S19 [Citrullus lanatus]1.1e-3070.65Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGG
        M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKITE RVGHKFGEFA+TRKR+++R+N  P K+GG
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGG

YP_003587364.1 ribosomal protein S19 [Cucurbita pepo]9.2e-3068.82Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK
        M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKITE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK

YP_003587380.1 ribosomal protein S19 [Cucurbita pepo]9.2e-3068.82Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK
        M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKITE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK

TrEMBL top hitse value%identityAlignment
A0A0A0LPU9 Uncharacterized protein2.0e-46100Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK
        MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK

A0A5A7VCX8 Ribosomal protein S199.3e-4493.62Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK
        MSPRSIWKGGFVDAFL KMKKNVEPLMN+KIWSRGSMILPEFVGSTVRVYNGKNF+RCKITE RVGHKFGEFAMTRKR+IARSNSAP KRGGKK
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK

D5I3D4 Ribosomal protein S195.3e-3170.65Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGG
        M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKITE RVGHKFGEFA+TRKR+++R+N  P K+GG
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGG

D5I3F0 Ribosomal protein S194.5e-3068.82Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK
        M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKITE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK

D5I3G6 Ribosomal protein S194.5e-3068.82Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK
        M  RSIWKG FVDAFL +MKK  +PL+N+KIWSR S ILPEFV S+VR+YNGK F+RCKITE RVGHKFGEFA+TRKR+++R+N  P K+ G+
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGK

SwissProt top hitse value%identityAlignment
P26874 Ribosomal protein S19, mitochondrial1.7e-1855.81Show/hide
Query:  RSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVK
        RSIWKG FVD  L K KK     +  +IWSR S ILP+FVG   ++YNGK F+  KITEE VGHKFGEFA TRK       + P K
Subjt:  RSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVK

P27527 Ribosomal protein S19, mitochondrial9.6e-3065.96Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK
        M  RSIWKG FVDAFL +MKK  + L N+KIWSR S ILPEFV   VR+YNGK F+RCKITE +VGHKFGEFA TRKR+ +R+N  P ++ GKK
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK

P39697 40S ribosomal protein S19, mitochondrial2.5e-2267.09Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRK
        M  RS+WK  FVDAFL K KKN    +N+KIWSR S ILPE+V S VR+YNGK  +RCKITE +VGHKFGEFA TRK K
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRK

P50893 Ribosomal protein S19, mitochondrial1.3e-1547.56Show/hide
Query:  RSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNS
        R+IWKG F+D F    +KN     N KI+SR S++ P+F+G  V +YNG  +I  KI E+ +GHKFGEFA TRK  I +  +
Subjt:  RSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNS

Q2RQW4 30S ribosomal protein S193.0e-1553.95Show/hide
Query:  RSIWKGGFVDAF-LSKMKKNVEPLMNK--KIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTR
        RS+WKG F+D + L+K +K      N+  KIWSR S I+P+FVG T  VYNG+ F+   +TE+ VGHKFGEFA TR
Subjt:  RSIWKGGFVDAF-LSKMKKNVEPLMNK--KIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTR

Arabidopsis top hitse value%identityAlignment
AT1G04270.2 cytosolic ribosomal protein S155.8e-0633.73Show/hide
Query:  AFLSKMKKNVEPLMNKK-----IWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRG
        A + K++K  E    +K        R  +I+PE +GS + VYNGK F + +I  E +GH   EF+++ K         PVK G
Subjt:  AFLSKMKKNVEPLMNKK-----IWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRG

AT5G09490.1 Ribosomal protein S19 family protein5.8e-0645.45Show/hide
Query:  RGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRK
        R  +I+PE +GS + VYNGK F + +I  E +GH   EF++T K
Subjt:  RGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRK

AT5G09500.1 Ribosomal protein S19 family protein1.3e-0539.66Show/hide
Query:  RGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRG
        R  +I+PE +GS + VYNGK F + +I  E +GH   EF+++ K         PVK G
Subjt:  RGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRG

AT5G47320.1 ribosomal protein S191.8e-2367.09Show/hide
Query:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRK
        M  RS+WK  FVDAFL K KKN    +N+KIWSR S ILPE+V S VR+YNGK  +RCKITE +VGHKFGEFA TRK K
Subjt:  MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRK

ATCG00820.1 ribosomal protein S191.1e-0736Show/hide
Query:  RSIWKGGFVDAFLSKMKKNVEPLMNKKI---WSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMT
        RS+ K  FV   L +  + +     K+I   WSR S I+P  +G T+ ++NG+  +   I +  VGHK GEF+ T
Subjt:  RSIWKGGFVDAFLSKMKKNVEPLMNKKI---WSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCCACGATCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGTCGAAAATGAAGAAGAATGTAGAACCACTTATGAACAAGAAAATTTGGTCACGTGGATCTAT
GATTCTGCCGGAATTCGTTGGTAGCACCGTACGAGTCTACAATGGAAAAAATTTTATTCGTTGTAAGATCACTGAAGAAAGGGTTGGCCATAAATTTGGAGAGTTTGCTA
TGACACGGAAACGAAAAATTGCGAGATCAAATAGTGCACCGGTAAAAAGAGGGGGGAAAAAGTAA
mRNA sequenceShow/hide mRNA sequence
TTAAAAAGGGCCGAAAGAAAACTTAGCCCAATCAATCTTGCAAAGACCAACAACATAAGCCCAATGTTTTAACTAAAAAAAAGAAAAGAAAAGAAAAAAGGAAACCCTAG
CTTCCACAATTCTTTCAACTTCTTCCTCAACTCTCACGTCTCTGCCTTTCACAAACCTCTGATCTTCATTCTCCACGGTGTAATCTTTCTCTTCGTTCATGTCGCCACGA
TCTATATGGAAGGGCGGTTTTGTTGATGCATTCCTGTCGAAAATGAAGAAGAATGTAGAACCACTTATGAACAAGAAAATTTGGTCACGTGGATCTATGATTCTGCCGGA
ATTCGTTGGTAGCACCGTACGAGTCTACAATGGAAAAAATTTTATTCGTTGTAAGATCACTGAAGAAAGGGTTGGCCATAAATTTGGAGAGTTTGCTATGACACGGAAAC
GAAAAATTGCGAGATCAAATAGTGCACCGGTAAAAAGAGGGGGGAAAAAGTAAAGTTGAAGCGCATATGCCATTTCGTATTCACCTTTTCTTTCTTATTCTCAATTCAAG
GTTAGTAAAATCAGTCTGGTGCTGTCATTGTAGTTGTTTTTTTCTATTTTGCGCCACAGACTGTCACTGTTTTCGTTTGATATCGCCACAGCTGTTGTTGGTTTCTGTAT
GATTCTGGATTTCAAATTCTGAATGACTCTGTTCTACCATGGTTAGATAGAACTATCTCGAGATATTGTATTCTGAAATGATAATGACGTTCATGTTACAAGATAGCCTT
TTTTTTTTTTTAATTTGTTGTTAATACAATAAATTTTCCTCGTT
Protein sequenceShow/hide protein sequence
MSPRSIWKGGFVDAFLSKMKKNVEPLMNKKIWSRGSMILPEFVGSTVRVYNGKNFIRCKITEERVGHKFGEFAMTRKRKIARSNSAPVKRGGKK