CuGenDBv2

Gene ID	CSPI02G24440
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L38
Genome location	Chr2:20976398..20976605
RNA-Seq Expression	CSPI02G24440
Synteny	CSPI02G24440
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0022618 - ribonucleoprotein complex assembly (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR002675 - Ribosomal protein L38e IPR038464 - Ribosomal protein L38e superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG2285043.1 hypothetical protein Bca52824_044647 [Brassica carinata]

4.0e-14

73.53

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK---------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK               KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK---------------KADKLKQSLHPGLSVQDL

NP_001364946.1 60S ribosomal protein L38 [Vitis vinifera]

4.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

QCG74680.1 60S ribosomal protein L38-like protein, partial [Coffea canephora]

4.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

XP_023745785.1 60S ribosomal protein L38 [Lactuca sativa]

4.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

XP_038906668.1 60S ribosomal protein L38-like [Benincasa hispida]

4.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LSS2 Uncharacterized protein

8.5e-18

96.23

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKA+KLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKADKLKQSLHPGLSVQDL

A0A0K9RIP0 Uncharacterized protein

2.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

A0A2G9I9K0 60S ribosomal protein L38

2.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

A0A6I9STD3 60S ribosomal protein L38

2.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

A0A6J1I9U6 60S ribosomal protein L38

2.0e-14

73.91

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KDVVKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

SwissProt top hits

e value

%identity

Alignment

O22860 60S ribosomal protein L38

6.9e-17

72.46

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

P46291 60S ribosomal protein L38

4.5e-16

69.57

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDAR+VKIK+ KD+VKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

Q32PB9 60S ribosomal protein L38

3.9e-12

59.42

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK+ KD VKFK                KA+KLKQSL PGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

Q95V84 60S ribosomal protein L38

2.5e-14

65.22

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDA+SVKIK+ KD VKFK                KADKLKQSL PGL+V++L
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

Q9JJI8 60S ribosomal protein L38

1.3e-12

60.87

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MP++I EIKDFLLTARRKDA+SVKIK+ KD VKFK                KA+KLKQSL PGL+V+DL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

Arabidopsis top hits

e value

%identity

Alignment

AT2G43460.1 Ribosomal L38e protein family

4.9e-18

72.46

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

AT3G59540.1 Ribosomal L38e protein family

4.9e-18

72.46

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Query:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL
        MPKQIHEIKDFLLTARRKDARSVKIKR KD+VKFK                KADKLKQSL PGLSVQDL
Subjt:  MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFK----------------KADKLKQSLHPGLSVQDL

Sequences

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CDS sequence

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ATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAGAAGGC
TGACAAATTGAAGCAGTCTCTTCACCCAGGTTTGAGTGTGCAAGATCTTTGA

mRNA sequence

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ATGCCAAAGCAAATCCATGAGATCAAAGATTTTCTTCTCACTGCAAGAAGAAAGGATGCCCGCTCGGTCAAAATCAAGAGGAGGAAAGATGTAGTGAAGTTTAAGAAGGC
TGACAAATTGAAGCAGTCTCTTCACCCAGGTTTGAGTGTGCAAGATCTTTGA

Protein sequence

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MPKQIHEIKDFLLTARRKDARSVKIKRRKDVVKFKKADKLKQSLHPGLSVQDL

CSPI02G24440 (gene) of Cucumber (PI 183967) v1 genome