CuGenDBv2

Gene ID	CSPI02G24450
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X2
Genome location	Chr2:20982415..20983203
RNA-Seq Expression	CSPI02G24450
Synteny	CSPI02G24450
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_011649875.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Cucumis sativus]

2.0e-58

100

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPIDTSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

XP_031736807.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Cucumis sativus]

2.0e-58

100

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPIDTSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

XP_031736808.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Cucumis sativus]

2.0e-58

100

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPIDTSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

XP_031736810.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X5 [Cucumis sativus]

2.0e-58

100

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPIDTSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

XP_031736811.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X6 [Cucumis sativus]

2.0e-58

100

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPIDTSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LQJ7 Helicase C-terminal domain-containing protein

9.8e-59

100

Show/hide

Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPIDTSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

A0A1S3B3E0 Fanconi anemia group M protein isoform X1

3.6e-53

92.37

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIAT GVCPR TDVES NRNSTFCTSE VPVLNLDKQFELVVAGRESISEVDSNRNV+IDDDEFYEGLDLDAVEAHAKLLL+KKVELP  MVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPID SPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

A0A1S3B3H7 Fanconi anemia group M protein isoform X2

3.6e-53

92.37

Show/hide

Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIAT GVCPR TDVES NRNSTFCTSE VPVLNLDKQFELVVAGRESISEVDSNRNV+IDDDEFYEGLDLDAVEAHAKLLL+KKVELP  MVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPID SPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

A0A5D3C872 Fanconi anemia group M protein isoform X2

3.6e-53

92.37

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        MNCSPEVVIAT GVCPR TDVES NRNSTFCTSE VPVLNLDKQFELVVAGRESISEVDSNRNV+IDDDEFYEGLDLDAVEAHAKLLL+KKVELP  MVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        QQQKNIPID SPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

A0A6J1FGG7 DEAD-box ATP-dependent RNA helicase FANCM isoform X4

4.0e-36

72.03

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Query:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT
        M  SPEVVI+T G CP  T+VES NRN TFC SE VP LNLD+QFELVVAGRESIS+V         DDEFYEGLDLDAVEA AKLLL+KKVELPQ+MVT
Subjt:  MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVT

Query:  QQQKNIPIDTSPSFDLGI
        Q  KN+ + TSPSFDLGI
Subjt:  QQQKNIPIDTSPSFDLGI

SwissProt top hits

e value

%identity

Alignment

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM

7.8e-05

34.23

Show/hide

Query:  ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVF----IDDDEFYEGLDLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPI
        +S  R  + C S   PV+NL+ +F        +ES   V SN         DDD F+  LD DA+EA A LLL K       K +   I     Q++  +
Subjt:  ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVF----IDDDEFYEGLDLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPI

Query:  D-TSPSFDLGI
        +  +PSFDLG+
Subjt:  D-TSPSFDLGI

Arabidopsis top hits

e value

%identity

Alignment

AT1G35530.1 DEAD/DEAH box RNA helicase family protein

5.6e-06

34.23

Show/hide

Query:  ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVF----IDDDEFYEGLDLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPI
        +S  R  + C S   PV+NL+ +F        +ES   V SN         DDD F+  LD DA+EA A LLL K       K +   I     Q++  +
Subjt:  ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVF----IDDDEFYEGLDLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPI

Query:  D-TSPSFDLGI
        +  +PSFDLG+
Subjt:  D-TSPSFDLGI

AT1G35530.2 DEAD/DEAH box RNA helicase family protein

5.6e-06

34.23

Show/hide

Query:  ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVF----IDDDEFYEGLDLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPI
        +S  R  + C S   PV+NL+ +F        +ES   V SN         DDD F+  LD DA+EA A LLL K       K +   I     Q++  +
Subjt:  ESMNRNSTFCTSEPVPVLNLDKQF--ELVVAGRESISEVDSNRNVF----IDDDEFYEGLDLDAVEAHAKLLLQK-------KVELPQIMVTQQQKNIPI

Query:  D-TSPSFDLGI
        +  +PSFDLG+
Subjt:  D-TSPSFDLGI

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAACTGCAGCCCAGAAGTTGTAATTGCTACAATTGGTGTCTGCCCAAGGACGACAGACGTGGAAAGCATGAATAGAAATTCGACATTTTGTACATCAGAACCTGTTCC
TGTACTTAATTTGGATAAACAGTTTGAGTTGGTGGTGGCAGGGAGAGAATCCATAAGCGAAGTGGATTCAAATAGAAATGTATTCATTGATGATGATGAATTTTATGAAG
GTCTTGACCTTGATGCAGTTGAGGCCCATGCAAAATTGCTCCTCCAGAAGAAAGTTGAGTTGCCACAGATTATGGTTACTCAGCAACAGAAGAATATTCCTATCGACACT
TCTCCATCTTTTGATCTTGGGATATGA

mRNA sequence

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ATGTTGTACTAAAATTGTGATCTTATACAACAGGCGTTCTTTGCTAAGTCAATCACCATTTGGGAGGTTGACTTCACCCCTAGCGACCAGGGTAACTGAAAGTGAAACTT
CTCCTGACAAGACATTGAATATTTTCCAGTCAACTGTAACAGACGACGTCAATCAATCTCATACACTGCATTCAAAACATGTGAAAATGAACTGCAGCCCAGAAGTTGTA
ATTGCTACAATTGGTGTCTGCCCAAGGACGACAGACGTGGAAAGCATGAATAGAAATTCGACATTTTGTACATCAGAACCTGTTCCTGTACTTAATTTGGATAAACAGTT
TGAGTTGGTGGTGGCAGGGAGAGAATCCATAAGCGAAGTGGATTCAAATAGAAATGTATTCATTGATGATGATGAATTTTATGAAGGTCTTGACCTTGATGCAGTTGAGG
CCCATGCAAAATTGCTCCTCCAGAAGAAAGTTGAGTTGCCACAGATTATGGTTACTCAGCAACAGAAGAATATTCCTATCGACACTTCTCCATCTTTTGATCTTGGGATA
TGACCGTTTTCTATGTGCATATGACTTGTTCAAATACTTAATTTCCGGAAAATATAATCTGGAAAGTTCGGTATTTGTTTTTGGACTCATACTCCTGATTTTCTTCGTGA
TTGGGGGATATCAAAGTGGCAAGTATGCTTAAATTATGATTTAGTGGTTGGGTGGGGAGGAGTATGTAAAAAACAAATACTACACTGCGTTGTACAAAAGTTATTAAAAT
AAGAATTTCAGTTTTGTTA

Protein sequence

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MNCSPEVVIATIGVCPRTTDVESMNRNSTFCTSEPVPVLNLDKQFELVVAGRESISEVDSNRNVFIDDDEFYEGLDLDAVEAHAKLLLQKKVELPQIMVTQQQKNIPIDT
SPSFDLGI

CSPI02G24450 (gene) of Cucumber (PI 183967) v1 genome