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CSPI02G24470 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G24470
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionDEAD-box ATP-dependent RNA helicase FANCM
Genome locationChr2:20998916..21000366
RNA-Seq ExpressionCSPI02G24470
SyntenyCSPI02G24470
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0032508 - DNA duplex unwinding (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016787 - hydrolase activity (molecular function)
GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domainsIPR001650 - Helicase, C-terminal
IPR027417 - P-loop containing nucleoside triphosphate hydrolase
IPR039686 - FANCM/Mph1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8652234.1 hypothetical protein Csa_022145 [Cucumis sativus]5.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

XP_008441145.1 PREDICTED: Fanconi anemia group M protein isoform X1 [Cucumis melo]5.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

XP_011649875.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Cucumis sativus]5.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

XP_016899456.1 PREDICTED: Fanconi anemia group M protein isoform X5 [Cucumis melo]5.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

XP_031736812.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7 [Cucumis sativus]5.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

TrEMBL top hitse value%identityAlignment
A0A0A0LQJ7 Helicase C-terminal domain-containing protein9.9e-5798.32Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

A0A1S3B2A7 Fanconi anemia group M protein isoform X42.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

A0A1S3B3H7 Fanconi anemia group M protein isoform X22.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

A0A1S4DTZ2 Fanconi anemia group M protein isoform X52.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

A0A1S4DUR1 Fanconi anemia group M protein isoform X32.9e-5697.48Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        +TKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRKHDGRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

SwissProt top hitse value%identityAlignment
A0A1D5PRR9 Fanconi anemia group M protein4.3e-3355.56Show/hide
Query:  DSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMG
        D+RV+IFS+FR SV++I   LS+   +VR   F+G S+GKS KG +QK Q  V+++FR GG+N +V+TC+GEEGLDI EVDL+ICFDA  SPIR++QRMG
Subjt:  DSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMG

Query:  RTGRKHDGRVDIL-----EHSIINQS
        RTGR+  GRV ++     E    NQS
Subjt:  RTGRKHDGRVDIL-----EHSIINQS

A2Q8R2 ATP-dependent DNA helicase mph17.6e-3051.26Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        E KD   +RV+IF +FR S  ++   L + E ++R   F+GQSS K  +G  QK Q  +++KF+ G +N IVAT IGEEGLDI EVDL++C+D++ SPIR
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        M+QRMGRTGRK  G++ +L
Subjt:  MIQRMGRTGRKHDGRVDIL

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM3.5e-5184.87Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVLEKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+R
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRVDIL
        MIQRMGRTGRK++GRV +L
Subjt:  MIQRMGRTGRKHDGRVDIL

Q8BGE5 Fanconi anemia group M protein homolog1.8e-3153.08Show/hide
Query:  KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMI
        K   +SRV+IFS+FR SV +I   L +   ++R   F+G +SGK+ KG +QK Q  V+ +FR GG+N +V+TC+GEEGLDI EVDL+ICFDA  SPIR+I
Subjt:  KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMI

Query:  QRMGRTGRKHDGRVDIL-----EHSIINQS
        QRMGRTGRK  GR+ ++     E    NQS
Subjt:  QRMGRTGRKHDGRVDIL-----EHSIINQS

Q8IYD8 Fanconi anemia group M protein4.3e-3354.62Show/hide
Query:  KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMI
        K   ++RV+IFS+FR SV++I   LS+ + I+R   F+G +SGKS KG +QK Q  V+++FR GG+N +V+TC+GEEGLDI EVDL+ICFD+  SPIR++
Subjt:  KDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMI

Query:  QRMGRTGRKHDGRVDIL-----EHSIINQS
        QRMGRTGRK  GR+ I+     E  I NQS
Subjt:  QRMGRTGRKHDGRVDIL-----EHSIINQS

Arabidopsis top hitse value%identityAlignment
AT1G35530.1 DEAD/DEAH box RNA helicase family protein9.4e-5285.34Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVLEKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+R
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGRV
        MIQRMGRTGRK++GR+
Subjt:  MIQRMGRTGRKHDGRV

AT1G35530.2 DEAD/DEAH box RNA helicase family protein2.1e-5186.09Show/hide
Query:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR
        + KDP+ SRVIIFSNFRGSVRDIM+ALS I D+V+ATEFIGQSSGK+LKGQSQK+QQAVLEKFRAGGFNVIVAT IGEEGLDIMEVDLVICFDAN+SP+R
Subjt:  ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIR

Query:  MIQRMGRTGRKHDGR
        MIQRMGRTGRK++GR
Subjt:  MIQRMGRTGRKHDGR

AT3G03300.1 dicer-like 21.4e-0740Show/hide
Query:  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE
        G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +    IQ  GR   ++   + ++E
Subjt:  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE

AT3G03300.2 dicer-like 21.4e-0740Show/hide
Query:  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE
        G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +    IQ  GR   ++   + ++E
Subjt:  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE

AT3G03300.3 dicer-like 21.4e-0740Show/hide
Query:  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE
        G +SG  L+ Q++K Q  ++E FR G  N+IVAT I EEGLD+   +LVI FD   +    IQ  GR   ++   + ++E
Subjt:  GQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGRKHDGRVDILE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTAC
TGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCA
CATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGG
AAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT
mRNA sequenceShow/hide mRNA sequence
GAAACGAAGGATCCACAAGATTCAAGGGTGATTATATTCTCAAATTTCAGGGGAAGTGTAAGGGACATTATGAGTGCACTATCCAAGATTGAAGACATTGTCAGAGCTAC
TGAGTTTATTGGTCAAAGCTCAGGAAAATCTCTCAAAGGTCAATCACAAAAGGTTCAACAGGCTGTTTTGGAGAAATTTCGTGCTGGCGGGTTCAATGTCATTGTTGCCA
CATGCATTGGTGAAGAAGGTCTTGATATAATGGAAGTCGATCTTGTTATCTGTTTCGATGCAAATATTTCACCAATAAGAATGATTCAGCGGATGGGTAGAACCGGAAGG
AAGCATGATGGAAGAGTGGATATCCTTGAACATTCAATTATCAATCAATCTCAT
Protein sequenceShow/hide protein sequence
ETKDPQDSRVIIFSNFRGSVRDIMSALSKIEDIVRATEFIGQSSGKSLKGQSQKVQQAVLEKFRAGGFNVIVATCIGEEGLDIMEVDLVICFDANISPIRMIQRMGRTGR
KHDGRVDILEHSIINQSH