CuGenDBv2

Gene ID	CSPI02G24830
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Transcription initiation factor IIA subunit 2
Genome location	Chr2:21288678..21295014
RNA-Seq Expression	CSPI02G24830
Synteny	CSPI02G24830
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process) GO:0005672 - transcription factor TFIIA complex (cellular component) GO:0003743 - translation initiation factor activity (molecular function) GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function) GO:0017025 - TBP-class protein binding (molecular function)
InterPro domains	IPR003194 - Transcription initiation factor IIA, gamma subunit IPR009083 - Transcription factor IIA, alpha-helical domain IPR009088 - Transcription factor IIA, beta-barrel IPR015871 - Transcription initiation factor IIA, gamma subunit, C-terminal IPR015872 - Transcription initiation factor IIA, gamma subunit, N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004138655.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]

2.0e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +KGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_004138656.1 transcription initiation factor IIA subunit 2 [Cucumis sativus]

1.6e-51

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_008441202.1 PREDICTED: transcription initiation factor IIA subunit 2 [Cucumis melo]

1.5e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_038884625.1 transcription initiation factor IIA subunit 2-like isoform X1 [Benincasa hispida]

2.4e-50

98.11

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDA FKNEDSNE VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

XP_038897043.1 transcription initiation factor IIA subunit 2 [Benincasa hispida]

2.6e-49

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDA+FKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMF8 Transcription initiation factor IIA subunit 2

9.8e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV +KGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A0A0LQ01 Transcription initiation factor IIA subunit 2

8.0e-52

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2F6 Transcription initiation factor IIA subunit 2

7.5e-50

96.23

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMT+ALESQVKSKV IKGHLHTYRFCDNVWTFILQDASFKNEDS+E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A1S3B2V9 Transcription initiation factor IIA subunit 2

8.0e-52

100

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

A0A6J1J100 Transcription initiation factor IIA subunit 2

2.2e-49

95.28

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKV IKGHLHTYRFCDNVWTFILQDA+FKNEDS E VGRIKIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

SwissProt top hits

e value

%identity

Alignment

A2XZI2 Transcription initiation factor IIA subunit 2

2.3e-48

88.68

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV IKGHLHTYRFCDNVWTFIL +ASFKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

O74948 Transcription initiation factor IIA subunit 2

3.3e-26

52.53

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSK
        +ELYRRS+IG+ LT+ LD+++  G +SP+LA++VL  FDKSMTEAL  +V+S++  KGHL TYRFCD VWTFI+++ SF+ ++      +I+IVAC ++
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSK

Q0DLD3 Transcription initiation factor IIA subunit 2

2.3e-48

88.68

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMV +GTLSPELAIQVLVQFDKSMTEALE+QVKSKV IKGHLHTYRFCDNVWTFIL +ASFKNE++ E VG++KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLLSQ
Subjt:  SKLLSQ

Q39236 Transcription initiation factor IIA subunit 2

5.2e-48

88.68

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Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Q54ND1 Transcription initiation factor IIA subunit 2

3.6e-25

55.88

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Query:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEV--VGRIKIVACDS
        +ELYR+STIG  LT+TL+E++ N  +S  L  ++L QFDK++ EAL + VK+K   KG LHTYRFCD+VWTFIL++A FK E +NE+  V R+KIVACD+
Subjt:  FELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEV--VGRIKIVACDS

Query:  KL
         +
Subjt:  KL

Arabidopsis top hits

e value

%identity

Alignment

AT4G24440.1 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.7e-49

88.68

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)

3.7e-49

88.68

Show/hide

Query:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD
        MATFELYRRSTIGMCLTETLDEMVQ+GTLSPELAIQVLVQFDKSMTEALESQVK+KV IKGHLHTYRFCDNVWTFILQDA FK++D  E V R+KIVACD
Subjt:  MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACD

Query:  SKLLSQ
        SKLL+Q
Subjt:  SKLLSQ

Sequences

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CDS sequence

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ATGGCAACATTCGAACTCTACCGCAGATCGACAATCGGAATGTGTTTGACTGAAACTTTAGATGAAATGGTCCAAAACGGTACTCTTAGTCCTGAGCTTGCTATTCAGGT
TCTTGTTCAGTTCGATAAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGGGCATTTACACACGTATCGGTTCTGCGACAATGTTTGGA
CATTCATTTTACAGGATGCCTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACTCTCACAATAA

mRNA sequence

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GTTTCAATAGAAAGAGTAAAGGAGGAAGGAAAAGCAAAAGCAACGGGAAACCCTAACCAAGATCTTCTTCTCCCTCTCTGCGTGTTGCTTCAACCGCCGAAGTCATCCTC
TCTCCAGCCACCACTGGGACAGACCTTCCTCCGCCATCCCGTTATTGACCTCACCTGCGTGCTTTTTCATTAACCACACGACACTCGAAGTTCCACCACGCCGGCGCTTC
CATCCTTCTGCGGTGGTGACCATCCACGCGAAACCCACAACGTTGACAATTTCAGAGACCTACACGCTCTAAACACCTTGGCGGCGACGTTTTCCACTCTTTCGGCGAGA
TCTTGATTTTCGAAGAAGAATGGCAACATTCGAACTCTACCGCAGATCGACAATCGGAATGTGTTTGACTGAAACTTTAGATGAAATGGTCCAAAACGGTACTCTTAGTC
CTGAGCTTGCTATTCAGGTTCTTGTTCAGTTCGATAAGTCCATGACTGAGGCTTTGGAATCACAGGTGAAAAGCAAGGTGATTATCAAGGGGCATTTACACACGTATCGG
TTCTGCGACAATGTTTGGACATTCATTTTACAGGATGCCTCGTTTAAAAATGAGGATTCCAATGAGGTTGTTGGAAGAATCAAAATAGTAGCATGTGACTCAAAGTTACT
CTCACAATAAGCTTTCAGACATCAGGCCGATTATTCAATGAAATATGCATAATTATTTGGTGATGATGGAGGGAAGAATAGTGAGTCAGTCAGTCACGTTGAGGAGGAAA
TGGGGCATCCAGGAAGAGATTCAAACGTGATTTTGTAAATTCAGTCAGTTACACTGACCATACATTTGACTGTAATTGGCTTCTAAAGTTGATTAGATGATAACATTGAT
ACCATCCTTCTTCAAGTTCAATGATAATAAAACATAATGATGATATCTGTTTCAATGTTATGCTATTAATTCTCTTTTGTAC

Protein sequence

Show/hide protein sequence

MATFELYRRSTIGMCLTETLDEMVQNGTLSPELAIQVLVQFDKSMTEALESQVKSKVIIKGHLHTYRFCDNVWTFILQDASFKNEDSNEVVGRIKIVACDSKLLSQ

CSPI02G24830 (gene) of Cucumber (PI 183967) v1 genome