; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI02G25630 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G25630
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptiongeneral transcription factor 3C polypeptide 6-like
Genome locationChr2:21742901..21745724
RNA-Seq ExpressionCSPI02G25630
SyntenyCSPI02G25630
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019481 - Transcription factor TFIIIC, triple barrel domain
IPR042771 - TFIIIC subunit GTF3C6-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056571.1 general transcription factor 3C polypeptide 6-like [Cucumis melo var. makuwa]4.7e-5381.25Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEKEAQPS
        MEKATIDSAS  EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVE+EAQPS
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEKEAQPS

Query:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS
        ET  CSRE  EPKQAT+KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS

XP_004138617.3 general transcription factor 3C polypeptide 6 [Cucumis sativus]2.8e-6198.44Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKATIDSAS VEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVE+EAQPSETLRCSREEVEPKQAT
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        KKELKLVACVHKILKFKLLDSDVPSSIS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

XP_016899393.1 PREDICTED: general transcription factor 3C polypeptide 6-like [Cucumis melo]3.5e-5691.41Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKATIDSAS  EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVE+EAQPSET  CSRE  EPKQAT
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        +KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]3.6e-4583.47Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKA IDSAS  EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VE+EA PSET R S + VEP QA 
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDS
        +K+LK VA VHKILKFKLLDS
Subjt:  KKELKLVACVHKILKFKLLDS

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]2.0e-5186.72Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKATIDSA  VEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEVPVVE+EA+PSE+ R SRE  EPKQA 
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        +KELK VA VHKILKFKLLDS VP+SIS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

TrEMBL top hitse value%identityAlignment
A0A0A0LML8 TFIIIC_sub6 domain-containing protein3.9e-6197.66Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKATIDSAS VEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVE+EAQPSETLRCSREEVEP+QAT
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        KKELKLVACVHKILKFKLLDSDVPSSIS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like1.7e-5691.41Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKATIDSAS  EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVE+EAQPSET  CSRE  EPKQAT
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDSDVPSSIS
        +KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  KKELKLVACVHKILKFKLLDSDVPSSIS

A0A5A7USU8 General transcription factor 3C polypeptide 6-like2.3e-5381.25Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEKEAQPS
        MEKATIDSAS  EEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE                EEVPVVE+EAQPS
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAE----------------EEVPVVEKEAQPS

Query:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS
        ET  CSRE  EPKQAT+KELK  ACVHKILKFKLLDSDVPS IS
Subjt:  ETLRCSREEVEPKQATKKELKLVACVHKILKFKLLDSDVPSSIS

A0A6J1FF13 uncharacterized protein LOC1114451216.7e-4581.82Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKA IDSAS  EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VE+EA PSET R S + VEP QA 
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLLDS
        +++LK VA VHKILKFKLLDS
Subjt:  KKELKLVACVHKILKFKLLDS

A0A6J1JTZ1 uncharacterized protein LOC1114897255.1e-4578.63Show/hide
Query:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT
        MEKA IDSAS  EEEYVL+DLGDVSLLDIPPNAPYVLSGLDTMNP+LTICDK KMIGEYEETIGTCLTFAEEEV +VE+EA PS+T R S + VEP QA 
Subjt:  MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQAT

Query:  KKELKLVACVHKILKFKLL---DSDVPSSIS
        +K+LK VA VHKILKFKLL   DS VP S S
Subjt:  KKELKLVACVHKILKFKLL---DSDVPSSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80745.1 Transcription factor TFIIIC, tau55-related protein3.4e-1744.64Show/hide
Query:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQATKKELKLVACV
        +E+E+V++DL DVS  +DIP +APY LSGLDT+NPVLTI  K K++GEY  TIGTCL F+++                      + +   KK ++ VA +
Subjt:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQATKKELKLVACV

Query:  HKILKFKLLDSD
        HKILKF+L   D
Subjt:  HKILKFKLLDSD

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein1.3e-1950Show/hide
Query:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQATKKELKLVACV
        +EEE+V++DL +VS  ++IP +APY LSGLDT+NPVLTI  K K++GEY ETIGTCL F+E+E      E   SE     ++ +EP          VA +
Subjt:  VEEEYVLLDLGDVSL-LDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQATKKELKLVACV

Query:  HKILKFKL--LDSD
        HKILKF+L  LD+D
Subjt:  HKILKFKL--LDSD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAAGCTACAATTGATTCCGCCTCTGGTGTCGAGGAAGAATATGTATTGCTTGACCTTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCT
ATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGTGACAAATTTAAGATGATTGGAGAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGAGGAAG
TCCCTGTGGTTGAAAAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGTTGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTA
CATAAGATCCTTAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAG
mRNA sequenceShow/hide mRNA sequence
ATTTATAGATAAAATATAAAAGAGAGAGCAACCCCATCTTTTTCCTTTACTTCATTGGTTGCGAGCAATGGGTAGTGCGTAAGCACCTCCTCCGAACCCCTTCCGACCTT
TCTATCACACTCACCTAACCCACCCTAAACCCCATACCAACACACAACACCTCCTCGCCGGCCCATTCTGCTCACTCCTGCATCTGACGTTTCCCAGTCTTTTCCGCTAA
GGCTCTCCATTCCACATTCTTTCTTTCTCTCTCTCTCTCAATCTCATCCTGTTCGCAGCACCTCTTAGCAGCCCTCGTCCATCTTCGCCACACTACTGCCGGACCTCCGT
CTGATTTCAAATTTTTACTTGATATTGCTTAGAGGCGTCTCTAAGGAACATGGAAAAAGCTACAATTGATTCCGCCTCTGGTGTCGAGGAAGAATATGTATTGCTTGACC
TTGGTGATGTATCGCTGCTTGACATTCCACCCAATGCTCCCTACGTTCTATCTGGTTTGGACACCATGAATCCAGTGTTGACTATCTGTGACAAATTTAAGATGATTGGA
GAATATGAAGAAACCATAGGCACATGCCTTACCTTTGCGGAAGAGGAAGTCCCTGTGGTTGAAAAAGAAGCTCAGCCATCTGAAACACTTCGTTGCTCGAGAGAAGAAGT
TGAACCAAAACAAGCTACCAAAAAGGAGTTGAAGCTCGTTGCCTGTGTACATAAGATCCTTAAATTCAAGTTACTTGATTCTGATGTTCCAAGCTCAATATCTTAGTGCA
CTAAAGAGACAGATTAATGTTAGTTCATATTTGTATATATTGAGGTGTCAGTTTTATGTATAGTTAGATGCAATGTGACAGATAACCTAAGTAAAGAACAAGTAGAGGGA
AAGGTGTATCCTTGTTGGTCAACTCATCACTATCCTCTATAGAATAGAACGGAGTGTTATCGTGGAAGCTAAGAGTATTTTCTTACCAAATATTTAAAATATTCTCCTTC
TCCTTTTACTATCCCCATATATAATTGTACAAGTTTATTACTCTGC
Protein sequenceShow/hide protein sequence
MEKATIDSASGVEEEYVLLDLGDVSLLDIPPNAPYVLSGLDTMNPVLTICDKFKMIGEYEETIGTCLTFAEEEVPVVEKEAQPSETLRCSREEVEPKQATKKELKLVACV
HKILKFKLLDSDVPSSIS