CuGenDBv2

Gene ID	CSPI02G25790
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Coilin
Genome location	Chr2:21878168..21880681
RNA-Seq Expression	CSPI02G25790
Synteny	CSPI02G25790
Gene Ontology terms	GO:0005634 - nucleus (cellular component)
InterPro domains	IPR024822 - Coilin

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034262.1 coilin isoform X1 [Cucumis melo var. makuwa]

2.1e-71

87.04

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKRRWLRERAQNEEQQQQLFET+L+QGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

KAE8652266.1 hypothetical protein Csa_022487 [Cucumis sativus]

4.7e-92

93.48

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Query:  MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVT
        MGPPCEQDEDHQRIYHVIHMVPSRSTRRKK KRRWLRERAQNEEQQQQLFETSLEQGPSPNDD+DMDDDTVPVVVKPGHIRFEPVGK          VVT
Subjt:  MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVT

Query:  DQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQV
        DQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQV
Subjt:  DQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQV

XP_008446142.1 PREDICTED: coilin isoform X1 [Cucumis melo]

2.1e-71

87.04

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKRRWLRERAQNEEQQQQLFET+L+QGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

XP_031741125.1 coilin isoform X1 [Cucumis sativus]

2.0e-74

90.18

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Query:  VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG
        VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEKQNHF KETLHWNG
Subjt:  VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG

Query:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        ITNKKKGQKWGKEK+PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

XP_031741126.1 coilin isoform X2 [Cucumis sativus]

5.4e-72

88.96

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Query:  VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG
        VPSRSTRRKKAKRRWLRERAQNEE  QQLFETSLEQGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEKQNHF KETLHWNG
Subjt:  VPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNG

Query:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        ITNKKKGQKWGKEK+PSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  ITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BF15 Coilin

9.9e-72

87.04

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKRRWLRERAQNEEQQQQLFET+L+QGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A1S3BF70 Coilin

2.7e-69

85.8

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKRRWLRERAQNEE  QQLFET+L+QGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A5A7ST29 Coilin

9.9e-72

87.04

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKRRWLRERAQNEEQQQQLFET+L+QGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A5D3CZQ0 Coilin

9.9e-72

87.04

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKRRWLRERAQNEEQQQQLFET+L+QGPS NDD+DMDDDTVPVVVKPGHIRFEPVGK          VVTDQAGQEK+NHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+SEPLQLLSETEQPKTPVPVVGSI+FDEL PYTGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQ

A0A6J1H0F7 Coilin

3.8e-63

79.14

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI
        PSRSTRRKKAKR+WLRERAQ+EEQQQQLFETS+ QGPS NDD+DMD+DTVPVVVKPGHIRFEPVGK          V  D AGQ+KQNHF KETLHWNGI
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNHFLKETLHWNGI

Query:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQL-LSETEQPKTPVPVVGSIHFDELPPYTGLPQ
        TNKKKGQKWGKEK+PSWKRNNSN C+ EPLQL  SETEQP TP PVVG I+FDEL P TGLPQ
Subjt:  TNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQL-LSETEQPKTPVPVVGSIHFDELPPYTGLPQ

SwissProt top hits

e value

%identity

Alignment

Q8RWK8 Coilin

1.2e-13

34.76

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR
        PSRS RRKKAKR+WLRE+ + E  +++L +T L   PS    I +D                         D+ VPV V+PGHIRF+P            
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR

Query:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG
        L  TD+A  + +   L E + WNG   KKKGQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Subjt:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG

Arabidopsis top hits

e value

%identity

Alignment

AT1G13030.1 sphere organelles protein-related

8.5e-15

34.76

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Query:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR
        PSRS RRKKAKR+WLRE+ + E  +++L +T L   PS    I +D                         D+ VPV V+PGHIRF+P            
Subjt:  PSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMD-------------------------DDTVPVVVKPGHIRFEPVGKGWVISFYFR

Query:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG
        L  TD+A  + +   L E + WNG   KKKGQKWG EKS   KR   + + D +++P +  +    P         I +++L  YTG
Subjt:  LVVTDQAGQEKQNHFLKETLHWNGITNKKKGQKWGKEKSPSWKR---NNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTG

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGTCCACCTTGTGAACAAGATGAGGACCATCAGAGGATCTACCATGTGATTCATATGGTTCCTAGTAGAAGTACTCGCCGTAAGAAGGCAAAAAGGCGTTGGTTGAG
GGAAAGAGCTCAAAATGAAGAGCAACAGCAACAGTTATTTGAAACAAGTTTAGAACAAGGGCCAAGTCCAAATGATGATATTGATATGGATGATGACACTGTTCCTGTGG
TAGTTAAGCCAGGTCACATTCGATTTGAGCCAGTTGGAAAAGGTTGGGTGATTTCTTTCTATTTTAGACTCGTTGTGACGGATCAGGCTGGGCAGGAAAAGCAAAACCAT
TTCCTTAAGGAAACATTGCATTGGAATGGCATCACCAACAAGAAGAAGGGCCAAAAATGGGGCAAAGAGAAAAGTCCATCTTGGAAGAGGAACAATTCTAACGATTGTAG
CAGCGAACCTCTTCAATTACTTTCTGAAACTGAGCAACCTAAAACTCCGGTTCCTGTAGTTGGTTCAATACATTTTGATGAACTTCCACCGTACACTGGCTTGCCTCAGG
TAGAGATCGTGATTCGAGGACCTGACCATTGTCTGCAGACTACTCTATGA

mRNA sequence

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Protein sequence

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MGPPCEQDEDHQRIYHVIHMVPSRSTRRKKAKRRWLRERAQNEEQQQQLFETSLEQGPSPNDDIDMDDDTVPVVVKPGHIRFEPVGKGWVISFYFRLVVTDQAGQEKQNH
FLKETLHWNGITNKKKGQKWGKEKSPSWKRNNSNDCSSEPLQLLSETEQPKTPVPVVGSIHFDELPPYTGLPQVEIVIRGPDHCLQTTL

CSPI02G25790 (gene) of Cucumber (PI 183967) v1 genome