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CSPI02G26110 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G26110
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal_L30 domain-containing protein
Genome locationChr2:22176600..22186490
RNA-Seq ExpressionCSPI02G26110
SyntenyCSPI02G26110
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]2.6e-4989.38Show/hide
Query:  ILQILDMNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPL
        IL++LDMNAFKAFKA+VPIAWS NLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQK+EQH++LRPPL
Subjt:  ILQILDMNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPL

Query:  VINHLPAPSSASA
        V+NHLPAPSS S+
Subjt:  VINHLPAPSSASA

XP_004151902.1 uncharacterized protein LOC101219925 [Cucumis sativus]4.8e-51100Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_008455933.1 PREDICTED: 50S ribosomal protein L30 [Cucumis melo]5.3e-5098.15Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

XP_022944386.1 uncharacterized protein LOC111448848 [Cucurbita moschata]1.1e-4792.59Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]2.9e-4894.44Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

TrEMBL top hitse value%identityAlignment
A0A0A0LN29 Ribosomal_L30 domain-containing protein2.3e-51100Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A1S3C214 50S ribosomal protein L302.6e-5098.15Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A5A7VAZ6 50S ribosomal protein L302.6e-5098.15Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKASVPIAWS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKME+HRALRPPLVINHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        APSSASAS
Subjt:  APSSASAS

A0A6J1CI25 uncharacterized protein LOC1110111343.5e-4792.52Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQK+EQH+ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASA
         PSS SA
Subjt:  APSSASA

A0A6J1FUA4 uncharacterized protein LOC1114488485.3e-4892.59Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP
        MNAFKAFKA+VPI WS NLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMYKARKQK+EQH ALRPPLV+NHLP
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLP

Query:  APSSASAS
        +PSSASAS
Subjt:  APSSASAS

SwissProt top hitse value%identityAlignment
A4QBL5 50S ribosomal protein L302.7e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

A8ZV75 50S ribosomal protein L302.7e-0445.61Show/hide
Query:  STNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        S ++ +TL + M G    HR+ L A+ L K NRTV   +TPTV+GMI++V  L+ VE
Subjt:  STNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

C3PL27 50S ribosomal protein L302.0e-0442.59Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8FS51 50S ribosomal protein L301.6e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8NSX3 50S ribosomal protein L301.6e-0448.15Show/hide
Query:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein9.7e-3465.14Show/hide
Query:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINH-L
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGMI QVKR+VVVETEEMY ARK+    H+ALRPPLV++H  
Subjt:  MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINH-L

Query:  PAPSSASAS
        PA  S++ S
Subjt:  PAPSSASAS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCTTTACTTTGGTGTTAAACTAAACGTTTCTTGTTTTAACCAAATCCTACAAAGAAGAATATCCCAAATCGTATCCAAAAATCAACAACACATTGCAAACATGCA
AAGTCTATCACCGGCTCACGGTCACTCCAAGATTCGGCAATCTCGTTTACCAGTTCCACACGACCACGATTCCAGTTCCGGCTCCTTAAAGATTTTGCAGATCTTGGATA
TGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTACA
TTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGA
AGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCCTTTACTTTGGTGTTAAACTAAACGTTTCTTGTTTTAACCAAATCCTACAAAGAAGAATATCCCAAATCGTATCCAAAAATCAACAACACATTGCAAACATGCA
AAGTCTATCACCGGCTCACGGTCACTCCAAGATTCGGCAATCTCGTTTACCAGTTCCACACGACCACGATTCCAGTTCCGGCTCCTTAAAGATTTTGCAGATCTTGGATA
TGAATGCCTTCAAGGCTTTCAAAGCCAGTGTCCCAATTGCATGGAGTACTAATCTTTATATCACATTAGTAAGAGGCATGCCAGGAACAAGGAGACTTCACAGACGTACA
TTAGAGGCATTGCGGCTCCGAAAATGTAACCGAACTGTCATGCGCTGGAACACTCCTACTGTTAGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTGGTTGAAACAGA
AGAAATGTATAAAGCTCGTAAACAGAAGATGGAACAGCACAGGGCGCTACGACCGCCATTAGTTATAAATCACCTTCCGGCACCAAGTTCTGCTTCTGCCTCTTGA
Protein sequenceShow/hide protein sequence
MILYFGVKLNVSCFNQILQRRISQIVSKNQQHIANMQSLSPAHGHSKIRQSRLPVPHDHDSSSGSLKILQILDMNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRT
LEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS