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CSPI02G27350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI02G27350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRibosomal protein S5 family protein
Genome locationChr2:23357370..23360556
RNA-Seq ExpressionCSPI02G27350
SyntenyCSPI02G27350
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005763 - mitochondrial small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004386 - helicase activity (molecular function)
InterPro domainsIPR000851 - Ribosomal protein S5
IPR005324 - Ribosomal protein S5, C-terminal
IPR014721 - Ribosomal protein S5 domain 2-type fold, subgroup
IPR020568 - Ribosomal protein S5 domain 2-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066311.1 putative 37S ribosomal protein S5 [Cucumis melo var. makuwa]2.7e-5198.11Show/hide
Query:  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTV
        AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNPLNTMRALFKALNAIETPKDIQEKFGRTV
Subjt:  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTV

Query:  VEKYLL
        VEKYLL
Subjt:  VEKYLL

KAG7011014.1 rpsE, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-4994.39Show/hide
Query:  SAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRT
        SAYEKCFQNLHYVERHEEHTIAHAVQT YKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNP NT++ALFKALNAIETPKDIQEKFGRT
Subjt:  SAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRT

Query:  VVEKYLL
        VVEKYLL
Subjt:  VVEKYLL

XP_004151847.1 probable 37S ribosomal protein S5, mitochondrial [Cucumis sativus]7.1e-5298.17Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

XP_008462792.1 PREDICTED: probable 37S ribosomal protein S5, mitochondrial [Cucumis melo]1.2e-5196.33Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNPLNTMRALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

XP_038902106.1 uncharacterized protein LOC120088744 [Benincasa hispida]1.0e-5094.5Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPA TTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNPLNT+RALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

TrEMBL top hitse value%identityAlignment
A0A1S3CJC3 probable 37S ribosomal protein S5, mitochondrial5.9e-5296.33Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNPLNTMRALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

A0A5A7VKZ9 Putative 37S ribosomal protein S51.3e-5198.11Show/hide
Query:  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTV
        AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNPLNTMRALFKALNAIETPKDIQEKFGRTV
Subjt:  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTV

Query:  VEKYLL
        VEKYLL
Subjt:  VEKYLL

A0A5D3BRU3 Putative 37S ribosomal protein S55.9e-5296.33Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKV+GSRNPLNTMRALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

A0A6J1D5I3 uncharacterized protein LOC1110172229.4e-5092.66Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHAVQTAYKKTK+YLWPAST TGMKAGKTVQTVLNLAGFKNVKSKV+GSRNP NT++ALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

A0A6J1G7C4 uncharacterized protein LOC1114514281.2e-4990.83Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        L  AYEKCFQNLHYVERHEEHTIAHA+QT YKKTK+YLWPASTTTGMKAGKTVQTVLNLAGFKN+KSKV+GSRNP NT++ALFKALNAIETPKDIQEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

SwissProt top hitse value%identityAlignment
C3K2V9 30S ribosomal protein S57.5e-1242.86Show/hide
Query:  TIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVE
        T+ +A+++A+  +K+Y+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP+N + A FK L A+++P+ I  K G TV E
Subjt:  TIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVE

P66586 30S ribosomal protein S51.3e-1136.19Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        +  + E+  +NL  V+ +   T+ HAV++ +   ++Y+ PAS  TG+ AG  ++ VL   G KNV +K +GSRNP+N +RA  K L+ +++P  +  K G
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVE
        + V E
Subjt:  RTVVE

Q1IFU9 30S ribosomal protein S54.4e-1242.86Show/hide
Query:  TIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVE
        T+ +A + A+  +K+Y+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP+N + A FK L A+++P+ I  K G+TV E
Subjt:  TIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVE

Q493J1 30S ribosomal protein S52.6e-1236.61Show/hide
Query:  RTLPNMLLPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPK
        R +P+ +  S  EK  +N+  +  + + T+ HAV+  Y  ++IY+ PAS  TG+ AG T++ +L + G  NV +K  GS NP+N +RA   AL ++++P+
Subjt:  RTLPNMLLPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPK

Query:  DIQEKFGRTVVE
         I EK G+++ E
Subjt:  DIQEKFGRTVVE

Q4K550 30S ribosomal protein S57.5e-1241.67Show/hide
Query:  TIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVE
        T+ +A+++A+  +K+Y+ PAS  TG+ AG  ++ VL +AG +NV +K  GS NP+N + A FK L A+++P+ I  K G++V E
Subjt:  TIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVE

Arabidopsis top hitse value%identityAlignment
AT1G64880.1 Ribosomal protein S5 family protein3.9e-4880.73Show/hide
Query:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        +  AYEKCFQNLHYVERHEEHTIAHA+QT+YKKTK+YLWPA TTTGMKAG+ V+T+L LAGFKN+KSKVIGSRN  NT++A+ KALNA+ETPKD+QEKFG
Subjt:  LPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG

Query:  RTVVEKYLL
        RTVVEKYLL
Subjt:  RTVVEKYLL

AT2G33800.1 Ribosomal protein S5 family protein7.4e-0734.07Show/hide
Query:  QNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG
        +N+  V   +  T  H  +  Y   K+ L PAS  TG+ AG  V+ VL +AG +N   K +GS N LN  RA   A+  +   +D+ ++ G
Subjt:  QNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKAGKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATATTTCTTCCTCACTCAAACTTCTAGAACTTGAGATGTTGGAAAAACCTCCAGGTTTAGCTCACATTCTAGAAGAAAATGCAAATGTTGAAATCGAAGCAGTAGA
CCTGATTTCCCTTTTCGAAGTTGAAGGTTGCAATTTTAGTAATTTCCCTTACTTCTCCCCAATCAAATCAGCAGGCGATATTCCCTCTCAAGGAGGATATCCTAGGCAGA
AATTGTTTTGGCAGCCAGTTGTAGACAGAGTTTACAAAAAGTCGGATAGATGGAAAAGGTTTAATATATCAAGAGGTGGAAGACAAATTCTTTGCAACTCGCAAGATCAA
TCATTTGGCTTCCTGGAAAAGGGTCAAGCCTTCTCAATTAGATGGGGGCTAGGTTTGGGCAGCTTAAAATATAAAAACAAGGCCCTCCTTGCTAAATGGGGTTGGAGGTT
TCTGAAAGAAGATTCTTTTCCAAATCTATTCAGATTAACTCAGCTCCCCAATGATTCAGTTGCTGCCCATTCGGATTATGTCACTAATTCTTGGTCATTAGTCTTTCGTG
GATTGCTAAAAGATGAAGAAATCCAAGATTTTCAAAGGCTATTAGCACTCATATCTCTGAAAGGTCTAACGGATTTGGATGCTAAGAGAGTTTGGTCATTAGAATACTCC
GGTCATTTTTCAATTAAGTCCCTTTCGAAGCACCTCTCTCCCTCTTCTCATTTGGAAAAAGACTGCTTTAAAGCACTTTGGAAAACCAGCAGTCCAAGGAGAATAAGTGT
CCTGGTTTGGATTGTGGCAGTTGATTCTCTAAATTGTTCCGAGACTATGCAAAGGACGCTTCCCAATATGTTGTTACCATCAGCATATGAGAAATGTTTCCAAAATCTTC
ATTATGTGGAACGACATGAGGAGCACACAATTGCACATGCAGTTCAGACGGCATACAAGAAAACAAAGATATATCTTTGGCCAGCATCAACTACCACAGGCATGAAAGCA
GGGAAAACTGTTCAAACTGTTCTGAATCTGGCTGGTTTTAAAAACGTCAAATCTAAGGTTATTGGCTCAAGAAACCCCCTGAACACTATGAGGGCCCTCTTCAAAGCTCT
AAATGCAATTGAGACTCCGAAGGATATTCAAGAAAAGTTCGGACGGACTGTTGTTGAGAAGTACTTGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATATTTCTTCCTCACTCAAACTTCTAGAACTTGAGATGTTGGAAAAACCTCCAGGTTTAGCTCACATTCTAGAAGAAAATGCAAATGTTGAAATCGAAGCAGTAGA
CCTGATTTCCCTTTTCGAAGTTGAAGGTTGCAATTTTAGTAATTTCCCTTACTTCTCCCCAATCAAATCAGCAGGCGATATTCCCTCTCAAGGAGGATATCCTAGGCAGA
AATTGTTTTGGCAGCCAGTTGTAGACAGAGTTTACAAAAAGTCGGATAGATGGAAAAGGTTTAATATATCAAGAGGTGGAAGACAAATTCTTTGCAACTCGCAAGATCAA
TCATTTGGCTTCCTGGAAAAGGGTCAAGCCTTCTCAATTAGATGGGGGCTAGGTTTGGGCAGCTTAAAATATAAAAACAAGGCCCTCCTTGCTAAATGGGGTTGGAGGTT
TCTGAAAGAAGATTCTTTTCCAAATCTATTCAGATTAACTCAGCTCCCCAATGATTCAGTTGCTGCCCATTCGGATTATGTCACTAATTCTTGGTCATTAGTCTTTCGTG
GATTGCTAAAAGATGAAGAAATCCAAGATTTTCAAAGGCTATTAGCACTCATATCTCTGAAAGGTCTAACGGATTTGGATGCTAAGAGAGTTTGGTCATTAGAATACTCC
GGTCATTTTTCAATTAAGTCCCTTTCGAAGCACCTCTCTCCCTCTTCTCATTTGGAAAAAGACTGCTTTAAAGCACTTTGGAAAACCAGCAGTCCAAGGAGAATAAGTGT
CCTGGTTTGGATTGTGGCAGTTGATTCTCTAAATTGTTCCGAGACTATGCAAAGGACGCTTCCCAATATGTTGTTACCATCAGCATATGAGAAATGTTTCCAAAATCTTC
ATTATGTGGAACGACATGAGGAGCACACAATTGCACATGCAGTTCAGACGGCATACAAGAAAACAAAGATATATCTTTGGCCAGCATCAACTACCACAGGCATGAAAGCA
GGGAAAACTGTTCAAACTGTTCTGAATCTGGCTGGTTTTAAAAACGTCAAATCTAAGGTTATTGGCTCAAGAAACCCCCTGAACACTATGAGGGCCCTCTTCAAAGCTCT
AAATGCAATTGAGACTCCGAAGGATATTCAAGAAAAGTTCGGACGGACTGTTGTTGAGAAGTACTTGCTATGA
Protein sequenceShow/hide protein sequence
MNISSSLKLLELEMLEKPPGLAHILEENANVEIEAVDLISLFEVEGCNFSNFPYFSPIKSAGDIPSQGGYPRQKLFWQPVVDRVYKKSDRWKRFNISRGGRQILCNSQDQ
SFGFLEKGQAFSIRWGLGLGSLKYKNKALLAKWGWRFLKEDSFPNLFRLTQLPNDSVAAHSDYVTNSWSLVFRGLLKDEEIQDFQRLLALISLKGLTDLDAKRVWSLEYS
GHFSIKSLSKHLSPSSHLEKDCFKALWKTSSPRRISVLVWIVAVDSLNCSETMQRTLPNMLLPSAYEKCFQNLHYVERHEEHTIAHAVQTAYKKTKIYLWPASTTTGMKA
GKTVQTVLNLAGFKNVKSKVIGSRNPLNTMRALFKALNAIETPKDIQEKFGRTVVEKYLL