; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G00720 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G00720
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptioncold shock domain-containing protein 3
Genome locationChr3:504754..507601
RNA-Seq ExpressionCSPI03G00720
SyntenyCSPI03G00720
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR002059 - Cold-shock protein, DNA-binding
IPR011129 - Cold shock domain
IPR012340 - Nucleic acid-binding, OB-fold
IPR019844 - Cold-shock (CSD) domain
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146143.1 cold shock domain-containing protein 3 [Cucumis sativus]1.1e-108100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGG
        GAGGGSGGGGGG
Subjt:  GAGGGSGGGGGG

XP_008448549.1 PREDICTED: cold shock domain-containing protein 3 [Cucumis melo]9.1e-10396.76Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD

Query:  CNRGGAGGGSGGGGGG
        CNRGGAGGGSGGGGGG
Subjt:  CNRGGAGGGSGGGGGG

XP_022923189.1 cold shock domain-containing protein 3-like [Cucurbita moschata]1.6e-9996.7Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGG
        GAGGGSGGGGGG
Subjt:  GAGGGSGGGGGG

XP_023551806.1 cold shock domain-containing protein 3-like [Cucurbita pepo subsp. pepo]7.2e-10096.23Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNRGG GGGGGGCFTCGEVGHLARDCPRGNS  GGGGGG GGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGG
        GAGGGSGGGGGG
Subjt:  GAGGGSGGGGGG

XP_038876618.1 cold shock domain-containing protein 3 [Benincasa hispida]1.8e-10397.63Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGG CYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGG GACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGG
        GAGGGSGGGGG
Subjt:  GAGGGSGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0L4X7 Uncharacterized protein5.4e-109100Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGG
        GAGGGSGGGGGG
Subjt:  GAGGGSGGGGGG

A0A1S3BKK1 cold shock domain-containing protein 34.4e-10396.76Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD

Query:  CNRGGAGGGSGGGGGG
        CNRGGAGGGSGGGGGG
Subjt:  CNRGGAGGGSGGGGGG

A0A5D3CJR2 Cold shock domain-containing protein 34.4e-10396.76Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD

Query:  CNRGGAGGGSGGGGGG
        CNRGGAGGGSGGGGGG
Subjt:  CNRGGAGGGSGGGGGG

A0A6J1E5N5 cold shock domain-containing protein 3-like7.8e-10096.7Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF GGGGGRGGR GGGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
        YGFGGWRGGDRRNG+SGAGGGGCYQCGEQGHLARDCTR SNR GGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARDCNRG
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  GAGGGSGGGGGG
        GAGGGSGGGGGG
Subjt:  GAGGGSGGGGGG

E5RDD6 Cold-shock DNA-binding family protein4.4e-10396.76Show/hide
Query:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG
        MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF   GGGGGGRGGRGGGG
Subjt:  MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNF---GGGGGGRGGRGGGG

Query:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD
        GGGYGFGGWRGGDRRNGNSG GGGGCYQCGEQGHLARDCTRPSNR GGGGGGGGGCFTCGEVGHLARDCPRGNS GGGGGGG GGGACYNCGGFGHLARD
Subjt:  GGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNR-GGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARD

Query:  CNRGGAGGGSGGGGGG
        CNRGGAGGGSGGGGGG
Subjt:  CNRGGAGGGSGGGGGG

SwissProt top hitse value%identityAlignment
O65639 Cold shock protein 16.4e-3551.79Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G  RGG G G    G  G
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG

Query:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGG--GGGGACYNCGGF
        +     G GG  GG  R      GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG+VGH+ARDC + + G G   G   GG   CY CG  
Subjt:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGG--GGGGACYNCGGF

Query:  GHLARDCNRGGAGGG--SGGGGGG
        GH ARDC +  A G   SGGGG G
Subjt:  GHLARDCNRGGAGGG--SGGGGGG

P27484 Glycine-rich protein 21.3e-3854.67Show/hide
Query:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRG-GG
        MAEE   R  G V+WF+D KGFGFI PD  G DLFVHQS I+S+G+RSL  G+ VEF++  G DG++KA++V   DG++       GGGGGGRGG G GG
Subjt:  MAEE---RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRG-GG

Query:  GGGGYGFGGWRGGDR--RNGNSGAGGGGCYQCGEQ--GHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG-----GGGGGGGGGGACYNC
        G GGYG GG RGG R    G+ G GGGG Y  G +  G            GGG GGG GCF CGE GH ARDC +   GG     GGGGGGGGGG CY C
Subjt:  GGGGYGFGGWRGGDR--RNGNSGAGGGGCYQCGEQ--GHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGG-----GGGGGGGGGGACYNC

Query:  GGFGHLARDCNRGG
        G  GH AR+C  GG
Subjt:  GGFGHLARDCNRGG

Q38896 Cold shock domain-containing protein 47.4e-3150.48Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG--GGGY
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+        GG  GGRGG GGGG  GGG 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG--GGGY

Query:  GFGGWRGGDRRNGNSGAGGGG----CYQCGEQGHLARDCTRPSNRGGGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGG-ACYNCGGFGHLA
        G G + GG    G+ G GGGG    C++CGE GH+AR+C    ++GGGG  GGGGG                G  G GGGGGGGGGG +CY+CG  GH A
Subjt:  GFGGWRGGDRRNGNSGAGGGG----CYQCGEQGHLARDCTRPSNRGGGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGG-ACYNCGGFGHLA

Query:  RDCNRGGA
        RDC  GGA
Subjt:  RDCNRGGA

Q41188 Cold shock protein 26.0e-3353.23Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGG-RGGRGGGGGGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN      GG GG  GGRGGG G G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGG-RGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
         G+GG  GG    G  G GG  CY+CGE GH+ARDC   S  GGG GGGGG    G  G        G  GGGG GGGGGGG+CY+CG  GH ARDC  G
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  G
        G
Subjt:  G

Q94C69 Cold shock domain-containing protein 31.2e-4155.2Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G         
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------

Query:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG---GGGGGGGGGGGACYNCGG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC +    N GGGGGGG  C++CGEVGHLA+DC  G+ G   GGGGG G GG  CY CGG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG---GGGGGGGGGGGACYNCGG

Query:  FGHLARDCNRGGAGGGSGGGG
         GH ARDC + G GG  GGGG
Subjt:  FGHLARDCNRGGAGGGSGGGG

Arabidopsis top hitse value%identityAlignment
AT2G17870.1 cold shock domain protein 38.6e-4355.2Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------
        R  G V WF+D KG+GFI PD  G +LFVHQSSI SDG+RSL +G+ VE++IA G DGK+KAIEV A  G S N+++N   G GG     G         
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGG---------

Query:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG---GGGGGGGGGGGACYNCGG
         GG GG  FGG  GG RR+G    G G CY CG+ GH ARDC +    N GGGGGGG  C++CGEVGHLA+DC  G+ G   GGGGG G GG  CY CGG
Subjt:  -GGGGGYGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRP--SNRGGGGGGGGGCFTCGEVGHLARDCPRGNSG---GGGGGGGGGGGACYNCGG

Query:  FGHLARDCNRGGAGGGSGGGG
         GH ARDC + G GG  GGGG
Subjt:  FGHLARDCNRGGAGGGSGGGG

AT2G21060.1 glycine-rich protein 2B5.2e-3250.48Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG--GGGY
        +R  G V+WF+  KGFGFI P   G DLFVHQSSI+S+G+RSL   + VEF +   + G+ KAIEV   DG+        GG  GGRGG GGGG  GGG 
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGG--GGGY

Query:  GFGGWRGGDRRNGNSGAGGGG----CYQCGEQGHLARDCTRPSNRGGGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGG-ACYNCGGFGHLA
        G G + GG    G+ G GGGG    C++CGE GH+AR+C    ++GGGG  GGGGG                G  G GGGGGGGGGG +CY+CG  GH A
Subjt:  GFGGWRGGDRRNGNSGAGGGG----CYQCGEQGHLARDCTRPSNRGGGG--GGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGG-ACYNCGGFGHLA

Query:  RDCNRGGA
        RDC  GGA
Subjt:  RDCNRGGA

AT4G36020.1 cold shock domain protein 14.6e-3651.79Show/hide
Query:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG
        R TG V WFN SKG+GFI PD    +LFVHQSSI S+GYRSL VGD VEF I  G DGK+KA+ V A  G S  + +N  G G  RGG G G    G  G
Subjt:  RLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGG----GGGG

Query:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGG--GGGGACYNCGGF
        +     G GG  GG  R      GG GCY CG+ GH ARDCT   N   RG   GG  GC+TCG+VGH+ARDC + + G G   G   GG   CY CG  
Subjt:  Y-----GFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSN---RGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGG--GGGGACYNCGGF

Query:  GHLARDCNRGGAGGG--SGGGGGG
        GH ARDC +  A G   SGGGG G
Subjt:  GHLARDCNRGGAGGG--SGGGGGG

AT4G38680.1 glycine rich protein 24.3e-3453.23Show/hide
Query:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGG-RGGRGGGGGGG
        ER  G V+WF+  KGFGFI PD  G DLFVHQSSI+S+G+RSL   + VEF++   ++ + KAI+V   DG+   GN      GG GG  GGRGGG G G
Subjt:  ERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGS--SGNRRDNFGGGGGG-RGGRGGGGGGG

Query:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG
         G+GG  GG    G  G GG  CY+CGE GH+ARDC   S  GGG GGGGG    G  G        G  GGGG GGGGGGG+CY+CG  GH ARDC  G
Subjt:  YGFGGWRGGDRRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRG

Query:  G
        G
Subjt:  G


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATC
TATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGAT
AGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGG
TGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGCGGTGGTGGGGCTT
GCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGATATAACTCTTACTACTACTAAT
TTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGTTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAGAGAGATTGACTGGTGTTGTTCAGTGGTTTAACGATTCCAAGGGCTTTGGCTTCATCAAGCCAGATGTTGAAGGTCCGGATCTGTTTGTTCATCAATCATC
TATTAAATCCGATGGTTACCGGAGCCTTGTCGTCGGAGATCATGTCGAGTTTCAGATCGCTCCTGGTGATGATGGAAAGTCGAAAGCCATTGAGGTTGTTGCGCTTGATG
GATCTTCGGGAAATCGGAGGGATAACTTTGGTGGTGGTGGAGGTGGAAGGGGTGGCCGCGGGGGAGGTGGCGGTGGAGGTTATGGGTTTGGTGGTTGGAGAGGAGGTGAT
AGGCGGAATGGGAACAGTGGAGCAGGTGGGGGTGGGTGTTATCAATGTGGTGAGCAAGGGCATTTGGCTAGAGATTGTACTCGTCCTAGTAACCGCGGCGGTGGCGGCGG
TGGAGGTGGTGGGTGTTTTACTTGCGGTGAAGTTGGTCACTTAGCGAGGGATTGTCCACGAGGGAACAGTGGTGGAGGCGGAGGTGGAGGCGGCGGCGGTGGTGGGGCTT
GCTACAATTGTGGTGGTTTTGGGCATTTGGCTAGGGATTGCAATAGGGGTGGAGCTGGAGGTGGAAGTGGTGGCGGCGGCGGCGGCGATATAACTCTTACTACTACTAAT
TTCAAACTTGCCCAAAAGATTTACCAAAAGAACAAGGGTTTATGA
Protein sequenceShow/hide protein sequence
MAEERLTGVVQWFNDSKGFGFIKPDVEGPDLFVHQSSIKSDGYRSLVVGDHVEFQIAPGDDGKSKAIEVVALDGSSGNRRDNFGGGGGGRGGRGGGGGGGYGFGGWRGGD
RRNGNSGAGGGGCYQCGEQGHLARDCTRPSNRGGGGGGGGGCFTCGEVGHLARDCPRGNSGGGGGGGGGGGGACYNCGGFGHLARDCNRGGAGGGSGGGGGGDITLTTTN
FKLAQKIYQKNKGL