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CSPI03G01220 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G01220
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionATP-dependent RNA helicase Dbp73D isoform 1
Genome locationChr3:855354..857096
RNA-Seq ExpressionCSPI03G01220
SyntenyCSPI03G01220
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015778.1 hypothetical protein SDJN02_23416 [Cucurbita argyrosperma subsp. argyrosperma]3.2e-6391.3Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDG+ GLPPNPE+TGVSAT A  SHGIEVAVEFKPVEHPIEP DND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVG+TRPR TRTILPSISAPEHNILNLLEESG+
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

XP_004146112.1 uncharacterized protein LOC101208810 isoform X1 [Cucumis sativus]7.1e-71100Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

XP_008448622.1 PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo]2.7e-7099.28Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

XP_022965310.1 uncharacterized protein LOC111465213 isoform X1 [Cucurbita maxima]4.2e-6391.3Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDG+ GLPPNPE+TGVSAT A  SHGIEVAVEFKPVEHPIEP DND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPR TRTILPSISAPEHNILNLL+ESG+
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

XP_038891759.1 uncharacterized protein LOC120081150 isoform X1 [Benincasa hispida]4.3e-6896.38Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFS+SRTGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHPIEPLDND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPR TRTILPSISAPEHNILNLLEESGI
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

TrEMBL top hitse value%identityAlignment
A0A0A0L159 Uncharacterized protein3.4e-71100Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

A0A1S3BL03 uncharacterized protein LOC103490741 isoform X21.3e-7099.28Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA ASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

A0A6J1E782 uncharacterized protein LOC111431237 isoform X14.5e-6390.58Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDG+ GLPPNPE+TGVSAT A  SHGIEVAVEFKPVEHPIEP DND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVG+TRPR TRTILPSISAPEHNILNLL+ESG+
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

A0A6J1FXM9 uncharacterized protein LOC111448107 isoform X17.7e-6389.21Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVS-ATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDL
        MVGIFSRFSSSRTGHRRAQSALDGREGLP  PE+TGVS  T+A ASHGIEVAVEFKPVEHPIEPLDND+PIQCPLPEPSILNDGRIWKERVSS+RK+PD+
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVS-ATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDL

Query:  PVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        PVMKE E+GETRPR TRTILPS+SAPEHNILNLLEESGI
Subjt:  PVMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

A0A6J1HNC4 uncharacterized protein LOC111465213 isoform X12.0e-6391.3Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP
        MVGIFSRFSSSRTGHRRAQSALDG+ GLPPNPE+TGVSAT A  SHGIEVAVEFKPVEHPIEP DND+PIQCPLPEPSILNDGRIWKERVSS+RKLPDLP
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLP

Query:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI
        VMKEAEVGETRPR TRTILPSISAPEHNILNLL+ESG+
Subjt:  VMKEAEVGETRPRPTRTILPSISAPEHNILNLLEESGI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31940.1 unknown protein2.4e-4564.38Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA-TASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVS-SMRKLPD
        MVGIFSRFS  R+ HRR QSA+D +E L PN +    + T+A TA+HGIEVA EFKPVEHP+EPLDND PIQCPLPEPSILNDGRIWKERVS SMR+  D
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSA-TASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVS-SMRKLPD

Query:  LPVMKEAEVGET---------RPRPTRTILPSISAPEHNILNLLEE
        L ++K+    E+          P+P R+ILPS+SAPEHN+LNLLEE
Subjt:  LPVMKEAEVGET---------RPRPTRTILPSISAPEHNILNLLEE

AT2G01913.1 unknown protein2.7e-0462.07Show/hide
Query:  VEFKPVEHPIEPLDNDQPIQCPLPEPSIL
        VEF PVEHPIEP + D+P++CP+P  S L
Subjt:  VEFKPVEHPIEPLDNDQPIQCPLPEPSIL

AT2G35585.1 unknown protein9.6e-4260.4Show/hide
Query:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERV--SSMRKLPD
        MVGIFSRFS  R  HRR QSA+DGRE L P  +    + T+ T +HGIEVA EFKPV+HP+EPLDNDQPIQCPLPEPSILNDGR+WKERV  SSMR+  D
Subjt:  MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERV--SSMRKLPD

Query:  LPVM-----KEAEVGET-------RPRPTRTILPSISAPEHNILNLLEE
        L ++     +E++V  T       +    R ILPS+SAPEH++LNLLEE
Subjt:  LPVM-----KEAEVGET-------RPRPTRTILPSISAPEHNILNLLEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGGCATTTTTTCAAGATTTTCTTCTAGCAGAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGT
TAGTGCTACTTCTGCTACTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAGCATCCAATCGAGCCTCTCGACAACGATCAGCCAATTCAGTGCCCAT
TGCCTGAACCGTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCAAGTATGCGAAAACTGCCAGATTTACCCGTCATGAAAGAAGCTGAAGTCGGCGAGACA
AGACCACGACCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGGCATTTTTTCAAGATTTTCTTCTAGCAGAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGT
TAGTGCTACTTCTGCTACTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAGCATCCAATCGAGCCTCTCGACAACGATCAGCCAATTCAGTGCCCAT
TGCCTGAACCGTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCAAGTATGCGAAAACTGCCAGATTTACCCGTCATGAAAGAAGCTGAAGTCGGCGAGACA
AGACCACGACCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG
Protein sequenceShow/hide protein sequence
MVGIFSRFSSSRTGHRRAQSALDGREGLPPNPESTGVSATSATASHGIEVAVEFKPVEHPIEPLDNDQPIQCPLPEPSILNDGRIWKERVSSMRKLPDLPVMKEAEVGET
RPRPTRTILPSISAPEHNILNLLEESGI