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CSPI03G01800 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G01800
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionlate embryogenesis abundant protein 6
Genome locationChr3:1268685..1268975
RNA-Seq ExpressionCSPI03G01800
SyntenyCSPI03G01800
Gene Ontology termsGO:0009793 - embryo development ending in seed dormancy (biological process)
InterPro domainsIPR005513 - Late embryogenesis abundant protein, LEA_1 subgroup


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577696.1 Late embryogenesis abundant protein 6, partial [Cucurbita argyrosperma subsp. sororia]5.4e-2575Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +V+KAS KTAEERKI EERRKAA AEAKRELHEAKARHAAQKLR R+SHVLG   HHQ P+EGG+      A NVPAYPI SPEGY+PGH+I
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
XP_004148757.1 late embryogenesis abundant protein 6 [Cucumis sativus]4.5e-4098.91Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +VEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
XP_008448704.1 PREDICTED: uncharacterized protein LOC103490795 [Cucumis melo]7.5e-3590.32Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL-GGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +VEKASVKTAEERKI+EERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL GGH HH SP+EGGAATHLGG TNVPAYPI SPEGY+PGHKI
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL-GGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
XP_023553167.1 late embryogenesis abundant protein 6-like [Cucurbita pepo subsp. pepo]1.8e-2576.92Show/hide
Query:  VEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        V+KASVKTAEERKI EERRKAA AEAKRELHEAKARHAAQKLR R+SHVLG   HHQ P+EGG+      A NVPAYPI SPEGY+PGH+I
Subjt:  VEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
XP_038906206.1 late embryogenesis abundant protein 6-like [Benincasa hispida]6.8e-2879.35Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +VEKASVKT EERKI EERRKAATAEAKRELHEAKARHAAQKLR++KSHVLGGH HH  PMEG AAT+LG A    AYPI + EGY+PGHKI
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
TrEMBL top hitse value%identityAlignment
A0A0A0L1A9 Uncharacterized protein4.7e-43100Show/hide
Query:  MQTTQVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        MQTTQVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
Subjt:  MQTTQVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
A0A1S3BKB4 uncharacterized protein LOC1034907953.6e-3590.32Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL-GGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +VEKASVKTAEERKI+EERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL GGH HH SP+EGGAATHLGG TNVPAYPI SPEGY+PGHKI
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL-GGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
A0A5D3CHS9 Seed maturation protein3.6e-3590.32Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL-GGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +VEKASVKTAEERKI+EERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL GGH HH SP+EGGAATHLGG TNVPAYPI SPEGY+PGHKI
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVL-GGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
A0A6J1E5Y8 late embryogenesis abundant protein 6-like isoform X25.8e-2573.91Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +V+KAS KTAEERKI EERRKAA AEAKRELHEAKARHAAQKLR R+SHV+G   HHQ P+EGG+      A NVPAYPI SPEGY+PGH+I
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
A0A6J1E6N7 late embryogenesis abundant protein 6-like isoform X15.8e-2573.91Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
        +V+KAS KTAEERKI EERRKAA AEAKRELHEAKARHAAQKLR R+SHV+G   HHQ P+EGG+      A NVPAYPI SPEGY+PGH+I
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G32560.1 Late embryogenesis abundant protein, group 1 protein8.6e-0536.54Show/hide
Query:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHV----LGGHRHHQSP-------MEGGAATHLGGATNVPA---YPITSPEGY
        + E+A  +T EE++I  +RRKA  AEA  ++H AKA HA  KL  ++SH      G H   Q+P       M  G   +  G T+VP    +P   P G+
Subjt:  QVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHV----LGGHRHHQSP-------MEGGAATHLGGATNVPA---YPITSPEGY

Query:  HPGH
        H  H
Subjt:  HPGH

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAACAACACAGGTGGAGAAAGCTTCGGTGAAGACAGCAGAGGAGAGGAAGATCATTGAGGAGAGAAGAAAGGCAGCAACGGCGGAGGCAAAGCGTGAGCTACACGA
GGCGAAAGCCAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACATGTACTTGGTGGCCATCGACACCATCAATCACCTATGGAGGGCGGTGCCGCTACACATCTTG
GCGGAGCAACAAATGTTCCGGCTTATCCTATAACCAGCCCGGAGGGGTACCATCCCGGACATAAAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAACAACACAGGTGGAGAAAGCTTCGGTGAAGACAGCAGAGGAGAGGAAGATCATTGAGGAGAGAAGAAAGGCAGCAACGGCGGAGGCAAAGCGTGAGCTACACGA
GGCGAAAGCCAGACATGCTGCTCAAAAGCTAAGGAATAGGAAATCACATGTACTTGGTGGCCATCGACACCATCAATCACCTATGGAGGGCGGTGCCGCTACACATCTTG
GCGGAGCAACAAATGTTCCGGCTTATCCTATAACCAGCCCGGAGGGGTACCATCCCGGACATAAAATTTAA
Protein sequenceShow/hide protein sequence
MQTTQVEKASVKTAEERKIIEERRKAATAEAKRELHEAKARHAAQKLRNRKSHVLGGHRHHQSPMEGGAATHLGGATNVPAYPITSPEGYHPGHKI