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CSPI03G01810 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G01810
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionLSD1 zinc finger family protein
Genome locationChr3:1270931..1274258
RNA-Seq ExpressionCSPI03G01810
SyntenyCSPI03G01810
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsIPR005735 - Zinc finger, LSD1-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]2.7e-10100Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
XP_008448702.2 PREDICTED: protein LSD1 isoform X2 [Cucumis melo]4.6e-1097.06Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        MCSGCKN+LIYPAGATSICCALCHAVTPVPTSGL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]4.6e-1097.06Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        MCSGCKN+LIYPAGATSICCALCHAVTPVPTSGL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
XP_022145337.1 protein LSD1-like [Momordica charantia]1.6e-0782.35Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        +CSGCKNLLIYP GATSICC LCH+V+PVPT GL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
XP_031738784.1 protein LSD1 [Cucumis sativus]2.7e-10100Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
TrEMBL top hitse value%identityAlignment
A0A0A0L592 zf-LSD1 domain-containing protein1.9e-09100Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTS
        MCSGCKNLLIYPAGATSICCALCHAVTPVPTS
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTS
A0A1S3BJQ2 protein LSD1 isoform X22.2e-1097.06Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        MCSGCKN+LIYPAGATSICCALCHAVTPVPTSGL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
A0A1S3BKC0 protein LOL1 isoform X12.2e-1097.06Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        MCSGCKN+LIYPAGATSICCALCHAVTPVPTSGL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
A0A4Y7KPP1 Uncharacterized protein4.4e-0672.73Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
        +CSGC+NLL+YP GATS+CCA+C+AVTPVP  G
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
A0A6J1CWA3 protein LSD1-like7.9e-0882.35Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
        +CSGCKNLLIYP GATSICC LCH+V+PVPT GL
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGL
SwissProt top hitse value%identityAlignment
Q0J7V9 Protein LSD11.7e-0769.7Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
        +CSGC+NLL+YPAGATS+CCA+C  VT VP  G
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
Q2QMB3 Protein LOL24.6e-0554.29Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAV-TPVPTSGL
        +C GC+N+L+YP GA S+CCA+CHAV +  P+ G+
Subjt:  MCSGCKNLLIYPAGATSICCALCHAV-TPVPTSGL
Q69UP7 Protein LOL18.5e-0776.67Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
        +CSGC+NLL+YPAGATSICCA+C  VT VP
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
Q6ASS2 Protein LOL31.3e-0460Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
        +C GC+++L YP+GA S+CCALC A+T VP
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
Q93ZB1 Protein LOL11.3e-0769.7Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
        +CSGC+NLL+YP GATS+CCA+C+AVT VP  G
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 19.3e-0969.7Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
        +CSGC+NLL+YP GATS+CCA+C+AVT VP  G
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
AT1G32540.2 lsd one like 19.3e-0969.7Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
        +CSGC+NLL+YP GATS+CCA+C+AVT VP  G
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
AT1G32540.3 lsd one like 19.3e-0969.7Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
        +CSGC+NLL+YP GATS+CCA+C+AVT VP  G
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVPTSG
AT4G20380.1 LSD1 zinc finger family protein2.4e-0453.33Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
        +C GC+NLL+YP GA+++ CALC+ +  VP
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
AT4G20380.2 LSD1 zinc finger family protein2.4e-0453.33Show/hide
Query:  MCSGCKNLLIYPAGATSICCALCHAVTPVP
        +C GC+NLL+YP GA+++ CALC+ +  VP
Subjt:  MCSGCKNLLIYPAGATSICCALCHAVTPVP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCTCTGGTTTGTTTCTGTA
TCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAAAAGGGCTGTGATTTCG
TTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTACTGGCTACTGCCATTGG
GATTTCGCCTTAACTTTCATCCATCAATGA
mRNA sequenceShow/hide mRNA sequence
CTGATTTATTTATTCAACTTTTGTAATAATTTTATTTAGGTCCTACTGCTTACATTATGCATAACCCGCCTCCACTAATCTTTAGTGAGGCTTCACCCACCTCAAGATAT
GCCTTCAAGTCATTGGTGCTGATACTTTTGATCACTACTTGATAATCAGTTCATATACAGGGTGATATTTAAACGTTACAAATTATAGGCAAAATTTAGATCCATTTGAA
AGCTGAAATATGTGTGGACTATCTTGTTAGTTTGTTAAGAAAGAAGAAGGCATATTATTATTATTATTTTTCTTTCTCCTTTTTCCTCCTACAATTGGCTTGTTTATCAG
TGTCAACTTTTTTGGAGGGAGGGATTTTCCTTTCCAAAGTGGTTCTAAAGTCGAAGTTTTAACTCCTAAAAACCTACATTTACTGCAACCTGCGAAGATATGGTAGGAAC
GAAGACAAAGCACGGTGTTGTCTTTGCCTGAGAAACCGAGTGTTGAAGAAATTCACCTGGAAAAGAAGTTTCTTCAACATCACAAAAGTGCCGTTTCCACCAGTTACTTG
TTGTCAAAACCAAATAATGTGCTCTGGATGTAAAAATCTGTTGATCTATCCTGCTGGAGCAACCTCCATTTGCTGTGCTCTTTGCCATGCTGTAACTCCTGTTCCAACCT
CTGGTTTGTTTCTGTATCCCTCCAATTTTCTTTTTATCTTTTTGAAAATTTGCTTTGATCACAATTCAAATATTTTTTTCTCTAATTTTAGTGAAATTAGAATAGTTAAA
AAGGGCTGTGATTTCGTTTCTTCCAACTTTAATTCCCTGTTCACCATGTTTGTTCTGAAGACATCGAAAAATCAGACATTTTCTCATGATAGTTTTTTTGTGCTAGTTAC
TGGCTACTGCCATTGGGATTTCGCCTTAACTTTCATCCATCAATGAAATTGTTTATTATTGAAAAAATCAAAACCACAATTTCATAAATCATCATTATGGCCAAAGAGAT
AAGCTATACACTCAAATTGTTTTGAAGTGATAAGTTCAAATCTCATGGGAGGTTGAGCTTCATTGACTATCTGTGAGGATACTACCTAACCAGAATCAATATCTGAAATA
TATTGAGAATTAAAGAAGAACTACAATATAATCCAAGTTTACTCCACAAAATAGTCTCTCCTTCACTCACTCACCCTCATACTATTAATACACATCCAGTAACTAACTTT
CCATCTAATGGCCAATATATCCCTTTTAACATACTAATATTCCTATCTGGGTACCTAATACCATCTTTGCGTCTATGGTCAATCTTGTTGGTTGCTTTCTCCTCTGATTA
TTGATTGAAGAAAGGGTGGAAGTAGTGAAGTTGCTACTAAATCTTGTGGAGTCTAGGTGGTTGAGTTTGCCTAGATATTCATAATTTTTAACAAAACAAATAAATCAATG
ATGATGGTGATTTGCAAGTTCCTATATGCTCGGAATTGTTTATAGTTAGGATATGATTGGTTTCGAATATGACCCTTAAGCAGGCTTAACGATGGCTCGGCTGGTGTGTA
GTGGCTGCTACACCCTGCTCATGTACAGTCGTGGGGCGAAAAGTGTACAATGTTCTTGTTGTCGCACCATAAATGCAGCTTCTGAAGCAAATCAGATGGCTCACATCAAC
TGTGGGAACTGTAGAGTGCTGCTGATGTACCAATGTGAAGCACATTCTGTTAAATGTACACTTTGCAATTTTGTCACCTCAGTTGGGATTTTGAGGTTTAATTAGTTCAT
AATTTCCCCTCTTTGTTTCTCCATTCTCAAACTTCACAGCACTTTGGATTGTTAGAGATGAACCCTAAAAATCACAACCTTCTATAATGGTTTGGAATGAAAAATGCTTC
TTTTAATGAAAAAGTTAAGATCCGGAATGTTTTCTAGATTGAAAGATTGAATCTTGACTTCAAAAGAGAGTGTGTGCCAATTATTGAGAGCTCTCAAGTCCACCTATTGT
AAAAG
Protein sequenceShow/hide protein sequence
MCSGCKNLLIYPAGATSICCALCHAVTPVPTSGLFLYPSNFLFIFLKICFDHNSNIFFSNFSEIRIVKKGCDFVSSNFNSLFTMFVLKTSKNQTFSHDSFFVLVTGYCHW
DFALTFIHQ