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CSPI03G02230 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G02230
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionE3 ubiquitin-protein ligase RNF34
Genome locationChr3:1669702..1672192
RNA-Seq ExpressionCSPI03G02230
SyntenyCSPI03G02230
Gene Ontology termsGO:0000492 - box C/D snoRNP assembly (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0062064 - box C/D snoRNP complex binding (molecular function)
InterPro domainsIPR027921 - NOP protein chaperone 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147238.2 uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus]1.6e-9599.01Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSK+PTRNEKPITE ASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

XP_008448773.1 PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo]3.4e-9094.55Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSKEP RNEKPITE ASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

XP_011650372.1 uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus]8.7e-9497.09Show/hide
Query:  MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
        MRHPSKDLLYLERKDLSSSSL    ESSLLVCKKNSTSK+PTRNEKPITE ASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ
Subjt:  MRHPSKDLLYLERKDLSSSSL----ESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQ

Query:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
Subjt:  LDLMLGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KIQVLS
Subjt:  KIQVLS

XP_023005549.1 uncharacterized protein LOC111498503 isoform X1 [Cucurbita maxima]3.8e-7381.07Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLL LERKDL SSSLESSLLVCKKNSTSKEP RNEKPITE A KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+GNESEVI+LDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTC----SSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LGIADLHTPEAV AAESAIIGN PVIPL C    SSSESESEESSDDSITSD++++DNEKSD Q TD  NRLSVKLKRS SR+ +CRS+S+ KGKS KRP
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTC----SSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KI  LS
Subjt:  KIQVLS

XP_038903017.1 uncharacterized protein LOC120089721 [Benincasa hispida]6.5e-8190.15Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLLYLERKDLSSSSLESSLLVCKKNSTSKEP RNEKPITE ASKSLVLGRVKDFLGVISEANKKLQMD+K+NAEKYDIEALDGNES+VI+LDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTC-SSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQ
        LGIADLHTPEAV AAESAIIGN PVIPLTC SSSESESEESSDDSITS+ +NDDNEKSDDQ TD SNR SVKLKRSNSRKTSCRSKSKGK KS+KRPKI 
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTC-SSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQ

Query:  VLS
         LS
Subjt:  VLS

TrEMBL top hitse value%identityAlignment
A0A0A0L448 Uncharacterized protein7.7e-9699.01Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSK+PTRNEKPITE ASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

A0A1S3BJW4 uncharacterized protein LOC1034908381.7e-9094.55Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSKEP RNEKPITE ASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

A0A5D3CJH5 E3 ubiquitin-protein ligase RNF341.7e-9094.55Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLL+LERKDLS+SSLESSLLVCKKNSTSKEP RNEKPITE ASKSLVLGRV+DFLGVISEANKKLQMDSKENA+KYDIEALDGNESEVIQLDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV
        LGIADLHTPEAV AAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDN+DNEKSDDQ TDCSNRLSVKLKRSNSRK SCRSKSKGKGKSKKRPKIQV
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQV

Query:  LS
        LS
Subjt:  LS

A0A6J1F913 uncharacterized protein LOC111443185 isoform X15.4e-7381.46Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLL LERKDL SSS ESSLLVCKKNSTSKEP RNEKPITE A KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+G+ESEVI+LDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPK
        LGIADLHTPEAV AAESAIIGN PVI L CSSS   ESESEESSDDSITSD+++DDNEKSD+Q TD  NRLSVKLKR  SRKT+CRS+SK KGKS KRPK
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTCSSS---ESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPK

Query:  IQVLS
        I  LS
Subjt:  IQVLS

A0A6J1KZJ8 uncharacterized protein LOC111498503 isoform X11.8e-7381.07Show/hide
Query:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM
        MRH SKDLL LERKDL SSSLESSLLVCKKNSTSKEP RNEKPITE A KS VLGRVKDFLGV+SEANKKLQ+D+K++AEKYDIEAL+GNESEVI+LDLM
Subjt:  MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLM

Query:  LGIADLHTPEAVTAAESAIIGNHPVIPLTC----SSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP
        LGIADLHTPEAV AAESAIIGN PVIPL C    SSSESESEESSDDSITSD++++DNEKSD Q TD  NRLSVKLKRS SR+ +CRS+S+ KGKS KRP
Subjt:  LGIADLHTPEAVTAAESAIIGNHPVIPLTC----SSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRP

Query:  KIQVLS
        KI  LS
Subjt:  KIQVLS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G71430.1 unknown protein1.2e-2145.83Show/hide
Query:  KDLLYLERKDLSSSS-LESSLLVC---KKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLML
        KDLL LE K+ SSSS ++S+LL+C    K     E     KP      KS +LG++K FLGV++EANKK    S+ N E Y+IEAL GNESE+I++DLML
Subjt:  KDLLYLERKDLSSSS-LESSLLVC---KKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLML

Query:  GIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS
        G+ADL+TPEAV+AAE+AI G  P          +ES +SS D    D  + ++E  + +  +CS + S
Subjt:  GIADLHTPEAVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGCATCCCAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGAGCC
TACTCGGAATGAAAAACCCATTACAGAATCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGG
ATTCAAAGGAAAATGCTGAAAAATATGATATCGAAGCCTTAGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAA
GCTGTGACTGCTGCTGAATCTGCAATAATTGGAAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAG
TGATCATGATAACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAA
GTAAAAGCAAAGGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATTTGTTTTTGGGCAGTTGACTCTTTGCTAAACCCTACTTCACGTTCAGCTATTGCTGCCCAACCTCCCGTCCCAGTGGGTGCCGGAGGTCTTGTTAGGACGTCTATTCA
CCTCTCCCTTCCTTCCTCACCTGGAAAAGTGCTTCCGGCTGCTGCTCTCATTGCCGACGCCACACCTTTGCTGTTGTGACCAGCTAGAAGAAGGGAAAGATGCGGCATCC
CAGCAAGGATCTTTTATATTTGGAGCGGAAAGATTTATCCTCTTCGTCTTTAGAATCCTCACTGCTAGTTTGTAAAAAAAACTCAACGTCCAAGGAGCCTACTCGGAATG
AAAAACCCATTACAGAATCAGCTTCAAAAAGCTTAGTATTGGGAAGAGTCAAAGACTTCTTGGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATTCAAAGGAA
AATGCTGAAAAATATGATATCGAAGCCTTAGATGGCAATGAATCAGAAGTGATTCAATTGGACCTGATGTTGGGTATTGCTGATCTTCATACTCCTGAAGCTGTGACTGC
TGCTGAATCTGCAATAATTGGAAATCACCCTGTAATTCCATTGACTTGTAGTAGTAGCGAGTCAGAGTCTGAAGAGAGTAGTGATGATAGTATTACCAGTGATCATGATA
ACGATGACAATGAAAAGAGCGATGATCAGAAGACTGACTGCAGTAACAGATTGTCAGTTAAACTCAAAAGATCAAATTCTAGAAAAACAAGCTGTAGAAGTAAAAGCAAA
GGAAAAGGTAAATCAAAGAAGCGACCAAAGATTCAAGTGCTCTCTTAAGATCCATCTTTTTTATCGGACCTGTTGCGTCAATATGGATGCATTGTGGTTTGAAAGTTTTA
TTCACGGTGGAGGGTATATGAAGTTTCTGAAGCTTGTTCTGACAAAATCTCCAAGGTTGCGATTGCTAGCCTAAACCTTTGAAGCTTGGGCGGTGTGAACTGATCTTTGC
TCGGCCTTGGGATTTTTAGATATTTCTCTTGTCAACTTTATCACAATTTCAAGTGCAGGAAAGGTGCCGTTTCTATGCATTTCTATTAGGAAATGTAATAGATTTTAAGT
TGTAACTAGTGTTGGTCAGTTTCACAATTTTGGTTTGTATTGATGATGTCGAATTTCGATGTTTTAAAAATGGCCCTTTTATATATATGTACGTTGTAGCTTCAAATAAG
TTAAATAGTTTAGAAGAAGGTTTTTTGAATGGTAAGAAG
Protein sequenceShow/hide protein sequence
MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPTRNEKPITESASKSLVLGRVKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPE
AVTAAESAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKTSCRSKSKGKGKSKKRPKIQVLS