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CSPI03G02770 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G02770
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationChr3:2158828..2160136
RNA-Seq ExpressionCSPI03G02770
SyntenyCSPI03G02770
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]4.6e-6496.92Show/hide
Query:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM
        MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHS+SQGIWS NHDQEGSFDKNNNDNILHNKENI+GIEMLKGMK+DGSRLVMEFPMKEKVM
Subjt:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_022154042.1 uncharacterized protein LOC111021396 [Momordica charantia]2.0e-1956.3Show/hide
Query:  MAMPYFFLILLFFSSTLHACDA-SRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPM--
        MA P    ILL   STLHACDA  RL+ F+ SN VSR+  L  I Q       DQ    +++ N NI+H   + V  GI +LKGMKK   RL MEF M  
Subjt:  MAMPYFFLILLFFSSTLHACDA-SRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPM--

Query:  KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        KEK+M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]1.0e-1853.24Show/hide
Query:  MAMP-YFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMK---
        M MP  FFL LLF S+ LHACDA  L+   SS   S +     IS G + TN  +    +  +ND  + + EN VGIE+LKGMKK   RL ME P++   
Subjt:  MAMP-YFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMK---

Query:  -----EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
             +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  -----EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]3.2e-4177.52Show/hide
Query:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLK-GMKKDGSRLVMEFPMKEKVMN
        MPY FLILL FSSTLHAC+A  LRFF+SS+FVSRI E HSISQGIW+     E SF+++N+D + + KE IVGIEMLK GMKK GSRLVMEFPMKEKV+N
Subjt:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLK-GMKKDGSRLVMEFPMKEKVMN

Query:  SKENEVGEDMVVMDYAQPHRKPPIHNEKP
        SKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  SKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]1.3e-4278.12Show/hide
Query:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMNS
        MPY FLILL FSSTLHAC+A  LRFF+SS+FVSRI E HSISQGIW+     E SF+++N+D + + KE IVGIEMLKGMKK GSRLVMEFPMKEKV+NS
Subjt:  MPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMNS

Query:  KENEVGEDMVVMDYAQPHRKPPIHNEKP
        KENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  KENEVGEDMVVMDYAQPHRKPPIHNEKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein2.2e-6496.92Show/hide
Query:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM
        MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHS+SQGIWS NHDQEGSFDKNNNDNILHNKENI+GIEMLKGMK+DGSRLVMEFPMKEKVM
Subjt:  MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A2C9WK84 Uncharacterized protein6.2e-0646.15Show/hide
Query:  ILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        I+ ++ N+     ++G+KK            +K + S EN++ ED+VVMDYAQPHRKPPIHNEKP
Subjt:  ILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A438K320 Uncharacterized protein6.2e-0633.87Show/hide
Query:  LILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMK-EKVMNSKENE
        L+LL  S ++HAC+A  L      N      E+H +S+ +   +   + S       + +   E +   ++L G K+    ++   P   E+ ++SKE +
Subjt:  LILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMK-EKVMNSKENE

Query:  VGEDMVVMDYAQPHRKPPIHNEKP
        + ED+VVMDYAQPHRKPPIHN+ P
Subjt:  VGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1DKL1 uncharacterized protein LOC1110213969.9e-2056.3Show/hide
Query:  MAMPYFFLILLFFSSTLHACDA-SRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPM--
        MA P    ILL   STLHACDA  RL+ F+ SN VSR+  L  I Q       DQ    +++ N NI+H   + V  GI +LKGMKK   RL MEF M  
Subjt:  MAMPYFFLILLFFSSTLHACDA-SRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIV--GIEMLKGMKKDGSRLVMEFPM--

Query:  KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        KEK+M+ +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  KEKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1KZM9 uncharacterized protein LOC1114985213.5e-1752.82Show/hide
Query:  MAMP-YFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMK--
        M MP   FL LLF S+ LHACDA  L+   SS   S +     IS G      DQ + S DK+ + N + + EN VGIE+LKGMKK   RL ME P++  
Subjt:  MAMP-YFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQ-EGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMK--

Query:  --------EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
                +KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  --------EKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 13.9e-0583.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).2.8e-0683.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTTCTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGAT
TAATGAACTGCATTCGATTTCTCAAGGGATTTGGAGTACAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTG
TTGGAATTGAAATGTTAAAGGGAATGAAGAAAGATGGAAGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGAC
ATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCCTCCTATTCACAATGAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
CCCTAATTCCATCTCTCATTATTCCAAACAAAACCCTCTTCTCTTTCACCTTTTCTCTCTTTTTCCTTTCTCATGGCTATGCCTTATTTCTTTCTCATTCTCTTATTCTT
CTCATCTACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCCAGAGTTCGAATTTTGTTTCCAGGATTAATGAACTGCATTCGATTTCTCAAGGGATTTGGAGTA
CAAATCATGATCAGGAGGGAAGTTTCGACAAAAACAACAATGACAACATTCTTCATAATAAGGAGAATATTGTTGGAATTGAAATGTTAAAGGGAATGAAGAAAGATGGA
AGCAGATTGGTAATGGAGTTTCCAATGAAAGAAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATGGATTATGCACAACCCCACAGGAAGCC
TCCTATTCACAATGAAAAACCCTAGATATATGTATAGATATATTGTAATATTTCTCAAATTTGCCATCAAATATTTAAATATGTTTAAAAAATAAAAGTCTTTTTCTTTT
TTAATTTTTCTATATATTGGAATAAAGAAAAAAAATAGAGTATAAATAACTATGTGAGGATTTATCTTTGATTTTATTTTAAAATTTATATATGCAAACGACTTTAATTT
GTATTTTGTATTCAAGGGTTTTTGTTATTTATATAATTTGAGTGA
Protein sequenceShow/hide protein sequence
MAMPYFFLILLFFSSTLHACDASRLRFFQSSNFVSRINELHSISQGIWSTNHDQEGSFDKNNNDNILHNKENIVGIEMLKGMKKDGSRLVMEFPMKEKVMNSKENEVGED
MVVMDYAQPHRKPPIHNEKP