CuGenDBv2

Gene ID	CSPI03G02780
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	tRNA_edit domain-containing protein
Genome location	Chr3:2163338..2168461
RNA-Seq Expression	CSPI03G02780
Synteny	CSPI03G02780
Gene Ontology terms	GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process) GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
InterPro domains	IPR007214 - YbaK/aminoacyl-tRNA synthetase-associated domain IPR036754 - YbaK/aminoacyl-tRNA synthetase-associated domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147201.1 uncharacterized protein LOC101218396 [Cucumis sativus]

1.1e-124

100

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Query:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
        MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
Subjt:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA

Query:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
        PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
Subjt:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE

Query:  TDLKLGIRTSEFINYVKPFIIKCS
        TDLKLGIRTSEFINYVKPFIIKCS
Subjt:  TDLKLGIRTSEFINYVKPFIIKCS

XP_008448863.1 PREDICTED: uncharacterized protein LOC103490895 [Cucumis melo]

6.0e-112

87.45

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MG+ESEAMAEQNSMEA                NL+LK LPNLDSPPSSVPSDGA DDDTVARLSAIL TNAVNDFSFKRVPSDYYDW LEARRDVLDAAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        IDHLCKSIVLVNTQAPSH+VDCSDRNNSKYYIVVVQYTAKFNAE ++SFLYSLNDGKIAKKKFNLRLAPEE S KLTGYEHNGVTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        IVKLNPDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

XP_022951583.1 uncharacterized protein LOC111454353 [Cucurbita moschata]

8.1e-101

79.5

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GA D DTVARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

XP_023538668.1 uncharacterized protein LOC111799544 [Cucurbita pepo subsp. pepo]

9.0e-100

79.08

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + SD A D DTV+RLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

XP_038903466.1 uncharacterized protein LOC120090048 [Benincasa hispida]

1.8e-108

84.94

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTESEAMAEQN MEA                 L+L  LPNLDS  SSVPSDG +D DTVARLSAIL TN+VNDFSFKRVPSDYYDWPLEARRDVLDAAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQAPSH+VDCSDRNNSKYYIVVVQYTAKFNAET++SFLYSLNDGKIAKKKFNLRLAPEE SAKLTGYEHNGVTCIGM+TDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        IVKLNPDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L4A0 tRNA_edit domain-containing protein

5.1e-125

100

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Query:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
        MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA
Subjt:  MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQA

Query:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
        PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE
Subjt:  PSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGE

Query:  TDLKLGIRTSEFINYVKPFIIKCS
        TDLKLGIRTSEFINYVKPFIIKCS
Subjt:  TDLKLGIRTSEFINYVKPFIIKCS

A0A1S3BLB4 uncharacterized protein LOC103490895

2.9e-112

87.45

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MG+ESEAMAEQNSMEA                NL+LK LPNLDSPPSSVPSDGA DDDTVARLSAIL TNAVNDFSFKRVPSDYYDW LEARRDVLDAAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        IDHLCKSIVLVNTQAPSH+VDCSDRNNSKYYIVVVQYTAKFNAE ++SFLYSLNDGKIAKKKFNLRLAPEE S KLTGYEHNGVTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        IVKLNPDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

A0A6J1DMB4 uncharacterized protein LOC111021353

2.0e-92

87.83

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Query:  SDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFL
        S GA D DTVARLSAIL TNAV+DFSFKRVP DYYDWPLEARRDVL A S+DHLCKSIVLVNTQAPS++VDCS+RNNSKYY+VVVQYTAKF+AET+++FL
Subjt:  SDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFL

Query:  YSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        YSLNDGKIAKKKFNLRLAPEE SAKLTGYEHNGVTCIGMKTDIPVILDEAI KLNPDYFWLGGGE DLKLGIRTSEF+N+VKPFI+KCS
Subjt:  YSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

A0A6J1GI39 uncharacterized protein LOC111454353

3.9e-101

79.5

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ AMAE+NSMEA                 L+L  LPNLDS PS + S+GA D DTVARLS IL TNAVNDFSFKRVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

A0A6J1KXM4 uncharacterized protein LOC111498483

2.8e-99

78.24

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Query:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS
        MGTE+ A+AE+NSMEA                 L+L  LPNLDS PS + SD A D DTV+RLS IL TNAVNDFSF RVPSDYYDW LEARRDVL+AAS
Subjt:  MGTESEAMAEQNSMEA---------------QNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAAS

Query:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA
        +DHLCKSIVLVNTQA SH+VDCS+RNNSKYY+VVVQY+AKFNAET+RSFLYSLNDGKI KKKFNLRLAPEEISA+LTGY HN VTCIGMKTDIPVILDEA
Subjt:  IDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEA

Query:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS
        I KL+PDYFWLGGGE DLKLGIRTSEFIN+VKPFIIKCS
Subjt:  IVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFIIKCS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT4G16510.1 YbaK/aminoacyl-tRNA synthetase-associated domain

1.3e-85

72.33

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Query:  LDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIV
        L+   LP   S   S PS   D+++TV RLS IL +  VNDF FKRV +DYYDWPLE+RRDVL A+S+DHLCKSIVLVNTQA S+I+DCSD NNSKYY+V
Subjt:  LDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDRNNSKYYIV

Query:  VVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKP
        VVQYTA+FNAE ++ FLYSLN+GKI KK+FNLRLAPEE S KLTG+EHNGVTCIGMKT+IPVILDEAI KL PD+FWLGGGE DLKLG+RTSEF+ +VKP
Subjt:  VVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKP

Query:  FIIKCS
        FI+ CS
Subjt:  FIIKCS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGAACTGAAAGTGAAGCAATGGCAGAGCAGAACTCCATGGAAGCACAGAACCTCGACCTCAAATGCCTTCCAAATCTTGACTCTCCTCCTTCCTCTGTTCCCTCTGA
TGGTGCTGATGACGACGACACCGTGGCTCGACTCTCTGCCATTCTCACAACCAACGCTGTCAACGACTTTTCCTTCAAAAGGGTGCCTTCCGATTACTACGATTGGCCCC
TCGAAGCGCGACGGGACGTTCTTGATGCTGCCTCTATCGACCATCTCTGCAAGAGCATCGTTCTGGTAAATACTCAAGCCCCATCCCATATTGTTGATTGCAGTGATCGC
AACAATTCAAAATACTATATTGTTGTTGTTCAGTATACTGCCAAATTTAATGCTGAAACGATTAGAAGCTTCCTGTATTCACTCAATGATGGCAAGATAGCAAAAAAGAA
ATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAAAACTAACTGGATATGAGCATAATGGAGTGACGTGCATTGGCATGAAAACGGATATTCCAGTGATTTTGGATG
AAGCGATTGTGAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGAGAAACCGACCTGAAGTTGGGAATCAGGACATCGGAATTCATAAACTATGTCAAACCCTTCATT
ATCAAGTGTAGTTAG

mRNA sequence

Show/hide mRNA sequence

TTGCAATTGAGAAAAGGAAATTGAGGTTCAGCTGAATTAGCAAATGGGAACTGAAAGTGAAGCAATGGCAGAGCAGAACTCCATGGAAGCACAGAACCTCGACCTCAAAT
GCCTTCCAAATCTTGACTCTCCTCCTTCCTCTGTTCCCTCTGATGGTGCTGATGACGACGACACCGTGGCTCGACTCTCTGCCATTCTCACAACCAACGCTGTCAACGAC
TTTTCCTTCAAAAGGGTGCCTTCCGATTACTACGATTGGCCCCTCGAAGCGCGACGGGACGTTCTTGATGCTGCCTCTATCGACCATCTCTGCAAGAGCATCGTTCTGGT
AAATACTCAAGCCCCATCCCATATTGTTGATTGCAGTGATCGCAACAATTCAAAATACTATATTGTTGTTGTTCAGTATACTGCCAAATTTAATGCTGAAACGATTAGAA
GCTTCCTGTATTCACTCAATGATGGCAAGATAGCAAAAAAGAAATTCAACTTGAGACTTGCTCCAGAGGAGATATCTGCAAAACTAACTGGATATGAGCATAATGGAGTG
ACGTGCATTGGCATGAAAACGGATATTCCAGTGATTTTGGATGAAGCGATTGTGAAACTAAATCCTGATTATTTTTGGTTGGGCGGTGGAGAAACCGACCTGAAGTTGGG
AATCAGGACATCGGAATTCATAAACTATGTCAAACCCTTCATTATCAAGTGTAGTTAGAATGACCCATTTTCACCCTGTTCAAGCTCAACAACAAATCAAACACAACAGA
CTAATACTACAAGGATCCAGGTTTTCAGTATTTGATGCTATTTAAATTCTTTCTACTTCTGAGTATCAATTGTTTTGTATGTTCCAAATGTGGATGGAACCAAAAACAGA
AAGAAAAGAAAAGGAAATTATTCATCATTCCTTAGAAATGGGATTCAGCTATTTAACTTGTGTTACAATCCAACCTTTAAATGAACATTAATGATTTTGATTAATGGACC
ACTTTCAATTTTGAGATGATTATGATGTGTGA

Protein sequence

Show/hide protein sequence

MGTESEAMAEQNSMEAQNLDLKCLPNLDSPPSSVPSDGADDDDTVARLSAILTTNAVNDFSFKRVPSDYYDWPLEARRDVLDAASIDHLCKSIVLVNTQAPSHIVDCSDR
NNSKYYIVVVQYTAKFNAETIRSFLYSLNDGKIAKKKFNLRLAPEEISAKLTGYEHNGVTCIGMKTDIPVILDEAIVKLNPDYFWLGGGETDLKLGIRTSEFINYVKPFI
IKCS

CSPI03G02780 (gene) of Cucumber (PI 183967) v1 genome