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CSPI03G03590 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G03590
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description(-)-germacrene D synthase-like
Genome locationChr3:2953119..2953772
RNA-Seq ExpressionCSPI03G03590
SyntenyCSPI03G03590
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR001906 - Terpene synthase, N-terminal domain
IPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR008949 - Isoprenoid synthase domain superfamily
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650087.1 hypothetical protein Csa_010373 [Cucumis sativus]3.5e-6296.99Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSFEEVESNSMTSNSNSSFNDNGVPH SEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVT  KFSKKLSLIDSIQRLGLSYHFDDEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGF
        VLMLMKNPCNVDDEHEDLYITALRFRLLRQQ F
Subjt:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGF

XP_008448975.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]4.1e-5886.96Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSFEEV+S+SMTSNSNSSFNDNGVP  SEK+Q SSLGHYFLSHQPKTL+EDKMI+K+LQELKEEVRSMFVT +KFS+KLSLIDSIQRLGLSYHFDDEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLM-LMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
        VLM LM+NPCN+D+EHEDLYITALRFRLLRQQG F+SC
Subjt:  VLM-LMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC

XP_008462842.2 PREDICTED: probable terpene synthase 2 isoform X1 [Cucumis melo]9.8e-2858.7Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSF+ + S S   N   + +DNGV   +E  Q S+ G YFLS+    LEED ++ KKL+ELKE  RSMFV A+K S KL LIDSIQ LGLSYHF+DEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC
        +L  ++N  +VD+E  EDLYI AL+FRLLRQQGF VSC
Subjt:  VLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC

XP_031738277.1 (-)-germacrene D synthase isoform X2 [Cucumis sativus]6.9e-6697.81Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSFEEVESNSMTSNSNSSFNDNGVPH SEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVT  KFSKKLSLIDSIQRLGLSYHFDDEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
        VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
Subjt:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC

XP_038877743.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase-like [Benincasa hispida]7.5e-3664.23Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSF+ V S+SMT N++S    +GVP  S  FQ S+ G +FLS++  TLEE++M+ K++QE KEEVR MF  A+K+S+KLSLIDSIQRLGLSYHF DE +E
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
        V+  ++NP NVD+E EDLYITALRFRLLRQQGFFVSC
Subjt:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC

TrEMBL top hitse value%identityAlignment
A0A0A0L782 Uncharacterized protein3.3e-6697.81Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSFEEVESNSMTSNSNSSFNDNGVPH SEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVT  KFSKKLSLIDSIQRLGLSYHFDDEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
        VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
Subjt:  VLMLMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC

A0A1S3BLW6 (-)-germacrene D synthase-like2.0e-5886.96Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSFEEV+S+SMTSNSNSSFNDNGVP  SEK+Q SSLGHYFLSHQPKTL+EDKMI+K+LQELKEEVRSMFVT +KFS+KLSLIDSIQRLGLSYHFDDEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLM-LMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC
        VLM LM+NPCN+D+EHEDLYITALRFRLLRQQG F+SC
Subjt:  VLM-LMKNPCNVDDEHEDLYITALRFRLLRQQGFFVSC

A0A1S3CHV0 probable terpene synthase 2 isoform X14.7e-2858.7Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSF+ + S S   N   + +DNGV   +E  Q S+ G YFLS+    LEED ++ KKL+ELKE  RSMFV A+K S KL LIDSIQ LGLSYHF+DEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC
        +L  ++N  +VD+E  EDLYI AL+FRLLRQQGF VSC
Subjt:  VLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC

A0A5A7VDK3 Putative terpene synthase 2 isoform X14.7e-2858.7Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE
        MSF+ + S S   N   + +DNGV   +E  Q S+ G YFLS+    LEED ++ KKL+ELKE  RSMFV A+K S KL LIDSIQ LGLSYHF+DEINE
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINE

Query:  VLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC
        +L  ++N  +VD+E  EDLYI AL+FRLLRQQGF VSC
Subjt:  VLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC

A0A5D3BQ16 Putative terpene synthase 2 isoform X12.6e-2655.63Show/hide
Query:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTL----EEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDD
        MSF+ + S S   N   + +DNGV   +E  Q S+ G YFLS+    L    +E+  + KKL+ELKE  RSMFV A+K S KL LIDSIQ LGLSYHF+D
Subjt:  MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTL----EEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDD

Query:  EINEVLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC
        EINE+L  ++N  +VD+E  EDLYI AL+FRLLRQQGF VSC
Subjt:  EINEVLMLMKNPCNVDDE-HEDLYITALRFRLLRQQGFFVSC

SwissProt top hitse value%identityAlignment
B9SBV6 Probable terpene synthase 37.5e-1547.75Show/hide
Query:  KFQSSSLGHYFLSHQPKTLEEDKMI---RKKLQELKEEVRSMFVT-AKKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITALRF
        +F  S  G YF+ + P    ++KM+   +++ + L+EEVR M ++  +K S KL LID IQRLG++YHF++EI EV+  + +  N DD+ EDLY  ALRF
Subjt:  KFQSSSLGHYFLSHQPKTLEEDKMI---RKKLQELKEEVRSMFVT-AKKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITALRF

Query:  RLLRQQGFFVS
        RLLRQQG+ VS
Subjt:  RLLRQQGFFVS

B9SCB6 Probable terpene synthase 21.5e-1542.99Show/hide
Query:  FQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITALRFRLLRQ
        F  +  G  FLS   ++ + +  + ++++ LKEEV+ M  +A + S+ L+LID +QRLG+SYHF+ EI E L  + N  +  D+ +DL+  ALRFRLLR+
Subjt:  FQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITALRFRLLRQ

Query:  QGFFVSC
        QG  VSC
Subjt:  QGFFVSC

O49853 (+)-delta-cadinene synthase isozyme C24.4e-1544.62Show/hide
Query:  NSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVLMLMKN
        + M S+S  S N + +  P   FQ S  G +FL+   K +  D    K+ Q+LKEEVR M V     S +KL+ IDS+QRLG+SYHF  EI + L  + +
Subjt:  NSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVLMLMKN

Query:  PCNVDDEHEDLYITALRFRLLRQQGFFVSC
          N +D   DLY T+LRFRLLR+ G+ VSC
Subjt:  PCNVDDEHEDLYITALRFRLLRQQGFFVSC

Q39760 (+)-delta-cadinene synthase isozyme XC147.5e-1545.38Show/hide
Query:  NSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVLMLMKN
        + M S+S  S N + +  P   FQ S  G  FL+   K +  D    K+ Q+LKEEVR M V     S +KL+ IDS+QRLG+SYHF  EI + L  + +
Subjt:  NSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVLMLMKN

Query:  PCNVDDEHEDLYITALRFRLLRQQGFFVSC
          N +D   DLY T+LRFRLLR+ GF VSC
Subjt:  PCNVDDEHEDLYITALRFRLLRQQGFFVSC

Q6Q3H3 (-)-germacrene D synthase7.3e-1850Show/hide
Query:  FQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITALRFRLLR
        F  S  G +FLS+  +    D  +++ +Q+LKEEVR M + A   S +KL LID+IQRLG++YHF+ EI+EVL  M +   V  E ED+Y  +LRFRLLR
Subjt:  FQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITALRFRLLR

Query:  QQGFFVSC
        QQG+ VSC
Subjt:  QQGFFVSC

Arabidopsis top hitse value%identityAlignment
AT2G24210.1 terpene synthase 106.1e-1237.72Show/hide
Query:  VPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKK-FSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITA
        V   S  +Q S   H+ L        +DK +R++   LKE+VR M    +K +  +L  ID +Q+LG+SYHF+ EI+ +L         + +  DL+ TA
Subjt:  VPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKK-FSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCNVDDEHEDLYITA

Query:  LRFRLLRQQGFFVS
        L FRL RQ GF VS
Subjt:  LRFRLLRQQGFFVS

AT3G25810.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein5.5e-1341.91Show/hide
Query:  SNSMTSNSNSSFNDNGVPHPSEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMF--VTAKKFSKKLSLIDSIQRLGLSYHFDDEINEVL--
        S SMT     + N   +   S  +Q SS  H Y LS + K + E ++I + +  LK++V+ M   V  K   +KL LID +Q+LG+SYHF+ EIN +L  
Subjt:  SNSMTSNSNSSFNDNGVPHPSEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMF--VTAKKFSKKLSLIDSIQRLGLSYHFDDEINEVL--

Query:  MLMKNPCNV--DDEHEDLYITALRFRLLRQQGFFVS
          ++N  N+   D+ EDL+ TAL FRLLRQ GF VS
Subjt:  MLMKNPCNV--DDEHEDLYITALRFRLLRQQGFFVS

AT3G25820.1 terpene synthase-like sequence-1,8-cineole3.2e-1343.48Show/hide
Query:  SEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVL----MLMKNPCNVDDEHEDLYIT
        S  +Q S   H Y LS + K   E ++I + +  LK++V+SM    KK   ++L LID +Q+LG+SYHF+ EIN+ L    + M   C   D+ EDL+ T
Subjt:  SEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVL----MLMKNPCNVDDEHEDLYIT

Query:  ALRFRLLRQQGFFVS
        +L FRLLRQ GF VS
Subjt:  ALRFRLLRQQGFFVS

AT3G25820.2 terpene synthase-like sequence-1,8-cineole3.2e-1343.48Show/hide
Query:  SEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVL----MLMKNPCNVDDEHEDLYIT
        S  +Q S   H Y LS + K   E ++I + +  LK++V+SM    KK   ++L LID +Q+LG+SYHF+ EIN+ L    + M   C   D+ EDL+ T
Subjt:  SEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVL----MLMKNPCNVDDEHEDLYIT

Query:  ALRFRLLRQQGFFVS
        +L FRLLRQ GF VS
Subjt:  ALRFRLLRQQGFFVS

AT3G25830.1 terpene synthase-like sequence-1,8-cineole3.2e-1343.48Show/hide
Query:  SEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVL----MLMKNPCNVDDEHEDLYIT
        S  +Q S   H Y LS + K   E ++I + +  LK++V+SM    KK   ++L LID +Q+LG+SYHF+ EIN+ L    + M   C   D+ EDL+ T
Subjt:  SEKFQSSSLGH-YFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFS-KKLSLIDSIQRLGLSYHFDDEINEVL----MLMKNPCNVDDEHEDLYIT

Query:  ALRFRLLRQQGFFVS
        +L FRLLRQ GF VS
Subjt:  ALRFRLLRQQGFFVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTTGAAGAAGTTGAATCAAACTCTATGACATCAAATTCTAATAGCTCCTTCAATGATAATGGTGTTCCTCATCCATCAGAAAAGTTTCAATCAAGTTCTTTGGG
ACATTATTTCCTTTCTCATCAACCCAAAACTTTGGAAGAAGACAAGATGATCAGGAAAAAACTTCAAGAACTAAAGGAAGAAGTAAGAAGCATGTTTGTCACTGCTAAGA
AATTTTCAAAAAAACTAAGTTTAATTGATTCAATCCAACGTTTAGGCTTGTCTTACCATTTTGATGATGAAATAAATGAAGTTTTAATGTTAATGAAAAATCCTTGCAAT
GTTGACGACGAACATGAGGATCTTTATATTACGGCTCTTAGATTCCGATTACTTCGACAACAAGGTTTCTTTGTTTCATGTGGTAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTTGAAGAAGTTGAATCAAACTCTATGACATCAAATTCTAATAGCTCCTTCAATGATAATGGTGTTCCTCATCCATCAGAAAAGTTTCAATCAAGTTCTTTGGG
ACATTATTTCCTTTCTCATCAACCCAAAACTTTGGAAGAAGACAAGATGATCAGGAAAAAACTTCAAGAACTAAAGGAAGAAGTAAGAAGCATGTTTGTCACTGCTAAGA
AATTTTCAAAAAAACTAAGTTTAATTGATTCAATCCAACGTTTAGGCTTGTCTTACCATTTTGATGATGAAATAAATGAAGTTTTAATGTTAATGAAAAATCCTTGCAAT
GTTGACGACGAACATGAGGATCTTTATATTACGGCTCTTAGATTCCGATTACTTCGACAACAAGGTTTCTTTGTTTCATGTGGTAAGTGA
Protein sequenceShow/hide protein sequence
MSFEEVESNSMTSNSNSSFNDNGVPHPSEKFQSSSLGHYFLSHQPKTLEEDKMIRKKLQELKEEVRSMFVTAKKFSKKLSLIDSIQRLGLSYHFDDEINEVLMLMKNPCN
VDDEHEDLYITALRFRLLRQQGFFVSCGK