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CSPI03G03610 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G03610
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description(-)-germacrene D synthase-like
Genome locationChr3:2963317..2963502
RNA-Seq ExpressionCSPI03G03610
SyntenyCSPI03G03610
Gene Ontology termsGO:0016102 - diterpenoid biosynthetic process (biological process)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0010333 - terpene synthase activity (molecular function)
InterPro domainsIPR008930 - Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid
IPR036965 - Terpene synthase, N-terminal domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650090.1 hypothetical protein Csa_009864 [Cucumis sativus]5.9e-1792Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAV RFMAR YISLY NNPLKNNN LLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
XP_008448975.1 PREDICTED: (-)-germacrene D synthase-like [Cucumis melo]1.1e-1576.67Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTSK
        MAMDSNSPF+EEAKYALKWPIYKAV+R MARHYISLYSNNPLKNN  L    L  N   K
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTSK
XP_011650452.2 (-)-germacrene D synthase isoform X1 [Cucumis sativus]1.5e-1798Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLK NNALLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
XP_031738277.1 (-)-germacrene D synthase isoform X2 [Cucumis sativus]1.5e-1798Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLK NNALLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
XP_031738278.1 LOW QUALITY PROTEIN: (-)-germacrene D synthase [Cucumis sativus]5.9e-1792Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAV RFMAR YISLY NNPLKNNN LLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
TrEMBL top hitse value%identityAlignment
A0A0A0L782 Uncharacterized protein7.5e-1898Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLK NNALLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
A0A0A0L791 Uncharacterized protein2.8e-1792Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAV RFMAR YISLY NNPLKNNN LLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
A0A1S3BLW6 (-)-germacrene D synthase-like5.3e-1676.67Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTSK
        MAMDSNSPF+EEAKYALKWPIYKAV+R MARHYISLYSNNPLKNN  L    L  N   K
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTSK
A0A1S4DXZ8 (-)-germacrene D synthase-like7.7e-1586Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
        MAMDSNSPFFEEAKYALKWPIYKAV RFMAR YISL   NPLK NN LLT
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLT
A0A5D3BQ16 Putative terpene synthase 2 isoform X11.1e-1366.1Show/hide
Query:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTS
        MAMDS SPF +EAKYALKWPIYK + RFM RHYISLY NNP KN+N +L T    ++ S
Subjt:  MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGATTCCAACTCTCCATTCTTTGAAGAAGCAAAATATGCATTGAAGTGGCCAATTTATAAAGCTGTGCAAAGGTTTATGGCTAGGCACTATATCTCTCTCTA
TAGCAACAATCCATTGAAGAACAATAATGCTTTGCTCACTACAATTCTCTCCAAAAACTTTACCAGTAAGAACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGGATTCCAACTCTCCATTCTTTGAAGAAGCAAAATATGCATTGAAGTGGCCAATTTATAAAGCTGTGCAAAGGTTTATGGCTAGGCACTATATCTCTCTCTA
TAGCAACAATCCATTGAAGAACAATAATGCTTTGCTCACTACAATTCTCTCCAAAAACTTTACCAGTAAGAACTAA
Protein sequenceShow/hide protein sequence
MAMDSNSPFFEEAKYALKWPIYKAVQRFMARHYISLYSNNPLKNNNALLTTILSKNFTSKN