CuGenDBv2

Gene ID	CSPI03G04370
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA polymerase II elongation factor
Genome location	Chr3:3561983..3563330
RNA-Seq Expression	CSPI03G04370
Synteny	CSPI03G04370
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.4e-95

83.26

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Query:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL 
Subjt:  IVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG

Query:  FSAMIFVTSKFILCG
        FS ++F  SKFILCG
Subjt:  FSAMIFVTSKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

2.1e-117

99.08

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAV+IGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
Subjt:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAMIFVTSKFILCGF
        GFSA+IFVTSKFILCGF
Subjt:  GFSAMIFVTSKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

4.8e-114

95.39

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAV+IGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI ISLL
Subjt:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAMIFVTSKFILCGF
        GFSA++F  SKFILCGF
Subjt:  GFSAMIFVTSKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

7.6e-96

83.18

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Query:  ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPI
        ET+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP 
Subjt:  ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPI

Query:  VCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGF
        VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL F
Subjt:  VCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGF

Query:  SAMIFVTSKFILCG
        S ++F  SKFILCG
Subjt:  SAMIFVTSKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

1.9e-107

92.24

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Query:  MAETKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS
        MAETKDS  AHIVEIPVEQENHTQN   MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTS

Query:  SDPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS
        SDP VCKKWWVPAV +GATSGVFVIVVQLKLW+YWKA GQLQ+EKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITI 
Subjt:  SDPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITIS

Query:  LLGFSAMIFVTSKFILCGF
        LLGFSA++F  SKFILC F
Subjt:  LLGFSAMIFVTSKFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

1.0e-117

99.08

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAV+IGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
Subjt:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAMIFVTSKFILCGF
        GFSA+IFVTSKFILCGF
Subjt:  GFSAMIFVTSKFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

2.3e-114

95.39

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Query:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
        MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD
Subjt:  MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSD

Query:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL
        PIVCKKWWVPAV+IGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFI ISLL
Subjt:  PIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLL

Query:  GFSAMIFVTSKFILCGF
        GFSA++F  SKFILCGF
Subjt:  GFSAMIFVTSKFILCGF

A0A5A7VJ68 Uncharacterized protein

1.0e-74

94.59

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Query:  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEP
        MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAV+IGATSGVFVIVVQLKLWMYWKARGQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEP
Subjt:  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEP

Query:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF
        QIGNRMKSSSVEIKWGPLTWFSRNFI ISLLGFSA++F  SKFILCGF
Subjt:  QIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF

A0A6J1EWB5 uncharacterized protein LOC111438709

1.3e-93

82.79

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Query:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLT  SRNF+TI LL 
Subjt:  IVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG

Query:  FSAMIFVTSKFILCG
        FS ++F  SKFILCG
Subjt:  FSAMIFVTSKFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

5.9e-94

83.26

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Query:  ETKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP
        ETKDS AA HIVEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP
Subjt:  ETKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP

Query:  IVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG
         VC KWWVP V +GATSGVFVIVVQLKLW+YWKA  QLQ+EK+ENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVEIKWGPLTW SRNF+TI LL 
Subjt:  IVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLG

Query:  FSAMIFVTSKFILCG
        FS ++F  SKFILCG
Subjt:  FSAMIFVTSKFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

1.3e-24

34.74

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Query:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLY-------TSSDPIVCKKWWVPAVLIGATSGVFVIVVQ
        HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  FFFLFH++SL LL+       +S+    CK+ W+P++    +S   +  V+
Subjt:  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLY-------TSSDPIVCKKWWVPAVLIGATSGVFVIVVQ

Query:  LKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLLGFSAMIFVTSKFILC
         K  +       L++EK + + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+     S ++    + ILC
Subjt:  LKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLLGFSAMIFVTSKFILC

AT5G56120.1 unknown protein

2.0e-62

53.97

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Query:  MAETKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLF
        MA TKDS   H+VEIPV++E+      Q L         ++ VIQ HPL +ISES GHLLLLKLWQR+E LF  R+  +E+++ES+K++IFQLCCFF +F
Subjt:  MAETKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLF

Query:  HALSLTLLYTSS---------DPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS
        H    TL+Y+SS            VCKKWW+P+ +  ATS V V +VQ KL+++WK    + +E+ +NR LTRCV ELRMKGS F+LSKEP  G RMKSS
Subjt:  HALSLTLLYTSS---------DPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS

Query:  SVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF
        SVEIKW P+TWFS+  ITI LL  + + F  SKFILCGF
Subjt:  SVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCG
ACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAA
AGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCG
GCAGTGTTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAG
AGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAAT
GGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATGATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAA

mRNA sequence

Show/hide mRNA sequence

CTTCAAAACTCAACAAAATTCCAATTCCAAACTCAAAATCATCGAAGTTCAAATCTCCAATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTA
GAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAG
AGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCT
CTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGTTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTG
AAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAA
TTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTG
GCTTTTCTGCCATGATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAATTGCCATTCGTCAGCAGGTGCTTGAAGAATTAAATATGCAATGGAGGATGAAGCAAG
ATGGGTCCGACATAAAAAATATCATTAGAGGGAAGCAAGGGAGGCTCCATTTTTGTAGAATCTTTACAAATTATGAAGAGAAGGATAGTGAGGAAAGTGTTGGCTTTTGA
AGTGAACTAAAAATCAGTGTTAATTAAGGCAACACTGCTTGTGTGACAACTTTTTGTTTTGGCTTTCTAAGCCTAATTAATGACTTGTCAATTTTGAAATTGGCCATATG
TAACTTTTTGGCTATTTATTATTTATTATTGATATATACATCCAATTCATTAT

Protein sequence

Show/hide protein sequence

MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVP
AVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF

CSPI03G04370 (gene) of Cucumber (PI 183967) v1 genome