CuGenDBv2

Gene ID	CSPI03G04780
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Translation elongation factor EF1B/ribosomal protein S6 family protein
Genome location	Chr3:3902247..3906958
RNA-Seq Expression	CSPI03G04780
Synteny	CSPI03G04780
Gene Ontology terms	GO:0006414 - translational elongation (biological process) GO:0005737 - cytoplasm (cellular component) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0003746 - translation elongation factor activity (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000529 - Ribosomal protein S6 IPR014717 - Translation elongation factor EF1B/ribosomal protein S6 IPR035980 - Ribosomal protein S6 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6596891.1 hypothetical protein SDJN03_10071, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-58

79.08

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDD K  L K  R N++GDDD DE++D+DD+DDEEY+VE ++   E
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

XP_008449133.1 PREDICTED: 30S ribosomal protein S6 [Cucumis melo]

2.0e-66

88.89

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDDDK+G  + +RLNLMG  DED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

XP_011650517.1 uncharacterized protein LOC101218568 [Cucumis sativus]

1.6e-76

99.35

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        FGLEFLGEDDDKNGLEKL+RLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

XP_022936695.1 uncharacterized protein LOC111443208 [Cucurbita moschata]

6.9e-59

79.74

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDD KN L K  R  ++GDDD DE++D+DDDDDEEY+VE ++   E
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

XP_023539684.1 uncharacterized protein LOC111800294 [Cucurbita pepo subsp. pepo]

1.4e-59

80.39

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDD KN L K  R N++GDDD DE++D+DDDDDEEY+VE ++   E
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2X6 Uncharacterized protein

7.9e-77

99.35

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        FGLEFLGEDDDKNGLEKL+RLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A1S3BLC8 30S ribosomal protein S6

9.7e-67

88.89

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYDVM LMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDDDK+G  + +RLNLMG  DED+D+D+DDDDDEEY+VE +DTKAE
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A6J1CN79 uncharacterized protein LOC111013137

1.7e-58

80.39

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHVKKEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGR+YQGQLMQMTMMATPNMNKEL YLNKEDR+LRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDD K  L K  R+ +MGDDD DE ED+DDD+DEEY+VE +++K E
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A6J1FEF6 uncharacterized protein LOC111443208

3.3e-59

79.74

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV DIKSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE
        +GLEFL EDD KN L K  R  ++GDDD DE++D+DDDDDEEY+VE ++   E
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

A0A6J1KXT7 uncharacterized protein LOC111498530

9.1e-57

80.14

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M LMKPHV+KEALLDLVARVGKHVFRRNGVV D+KSFGVVQLGYGIKKLDGRY+QGQLMQMTMMATPNMNKEL YLNKEDRLLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVE
        +GLEFL EDD KN L K  R +++GDDD DE++D+DDDDD E   E
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein

8.4e-39

61.15

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M L KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+YQGQLMQ+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDD
             +G+ + ++ L   NRL   G   +    DEDD++
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDD

AT3G18760.2 Translation elongation factor EF1B/ribosomal protein S6 family protein

3.7e-34

57.55

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Query:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ
        MPLYD M L KP ++KE L+DLVAR+GKHV+ RNGV+ +IKSFG V+LGYGI+KLDGR+Y     Q+TMM TPNMNKEL YLNKED+LLRW+LVKHRD +
Subjt:  MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQ

Query:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDD
             +G+ + ++ L   NRL   G   +    DEDD++
Subjt:  FGLEFLGEDDDKNGLEKLNRLNLMGDDDEDEDEDEDDDD

Sequences

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CDS sequence

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ATGCCTCTTTACGATGTTATGTTTTTGATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAATGGGGTTGT
CTGTGACATTAAGTCATTTGGTGTTGTCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCA
ACATGAACAAGGAGTTGTTTTACTTAAACAAGGAGGATCGGTTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATTTGGCCTGGAATTCCTTGGCGAAGATGAT
GACAAGAATGGACTTGAAAAATTAAATCGACTTAACTTGATGGGTGATGACGATGAAGATGAAGATGAAGATGAAGACGACGACGATGATGAAGAATACAATGTGGAACC
TGACGATACGAAAGCAGAGTGA

mRNA sequence

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CGGCGCCCGCCGTACGCTGCACTCTTATCTGCCAGATTCTCATCTTTTGGACGAACTCGCCGCCTCTCCCTCCCTCTCACACTCTCTCCCTTCCCCAAGCAACCAGAGCT
ACTTATCTCTGTTGTTCATCTCAGAAATAGAAACACTGGTTCAGCCCCGCTGTTGGTGAGATCGTACCGCCCCTCACGCCTACTGCTGCTCATTTTTTAGATCCCAAGGA
GTTAAGTGAAGGAAACGGCGCAGGCTACCATTTCTCTCAGAAGTTCGAAATAGGAATTTTAGTTCTAAAGAACAGAAGATTAAGATGCCTCTTTACGATGTTATGTTTTT
GATGAAACCCCATGTAAAGAAGGAGGCTTTGTTGGACTTGGTTGCTAGAGTGGGCAAGCATGTGTTCAGGAGAAATGGGGTTGTCTGTGACATTAAGTCATTTGGTGTTG
TCCAATTGGGTTATGGTATTAAGAAGCTTGATGGAAGATATTATCAGGGCCAACTTATGCAGATGACGATGATGGCTACTCCCAACATGAACAAGGAGTTGTTTTACTTA
AACAAGGAGGATCGGTTGTTGCGTTGGATTTTAGTGAAGCACCGTGACAGACAATTTGGCCTGGAATTCCTTGGCGAAGATGATGACAAGAATGGACTTGAAAAATTAAA
TCGACTTAACTTGATGGGTGATGACGATGAAGATGAAGATGAAGATGAAGACGACGACGATGATGAAGAATACAATGTGGAACCTGACGATACGAAAGCAGAGTGAATTT
TGCGAGTCTCTATTTTCATGGCCTAACTTTCAACTTGTTTGAAGGACCTCTTGTACCATTTTTGGATTCTAGACAGACAAATAAATAGGTCCATAGTTTCTTTAGTTGTC
CTTGTCCATATTATCTGTTTCTCAGAAACAAAGGTCCATAAATGTCTTTTTCTCAAACTTCCATTAGAATGGGATGTTTTCCAGGTCTTGGATTTCAGCTCTAAATGAAA
AGTTCAAGAAATGAATACCCTTGTCTGTCTTTTTGTACTTTATTCTTGCTTTTATTGACCTTGTATTGAATGAAACTGGAGCAATTATGAGGTTTGATGAAGATTTGGTT
GAGATCATCTAGGTTTGTATCAAGTGATATTCAATTCAAATAAGGTTGTGGTGGTTGTTCTTGAATTTTTACTTGTTTTCTTCTAATGAAC

Protein sequence

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MPLYDVMFLMKPHVKKEALLDLVARVGKHVFRRNGVVCDIKSFGVVQLGYGIKKLDGRYYQGQLMQMTMMATPNMNKELFYLNKEDRLLRWILVKHRDRQFGLEFLGEDD
DKNGLEKLNRLNLMGDDDEDEDEDEDDDDDEEYNVEPDDTKAE

CSPI03G04780 (gene) of Cucumber (PI 183967) v1 genome