; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G05270 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G05270
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein LHCP TRANSLOCATION DEFECT
Genome locationChr3:4278606..4280826
RNA-Seq ExpressionCSPI03G05270
SyntenyCSPI03G05270
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0090391 - granum assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
GO:0009941 - chloroplast envelope (cellular component)
InterPro domainsIPR036770 - Ankyrin repeat-containing domain superfamily
IPR044242 - Protein LHCP TRANSLOCATION DEFECT-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004152919.1 protein LHCP TRANSLOCATION DEFECT [Cucumis sativus]5.4e-8999.4Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRA+NEEIKDFILNFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

XP_008463435.1 PREDICTED: protein LHCP TRANSLOCATION DEFECT [Cucumis melo]3.8e-8797.02Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTA+DRALNEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

XP_022932181.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita moschata]3.9e-7989.88Show/hide
Query:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK

XP_022985270.1 protein LHCP TRANSLOCATION DEFECT [Cucurbita maxima]7.8e-8090.48Show/hide
Query:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCTS SINL+P SFNSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK

XP_038903413.1 protein LHCP TRANSLOCATION DEFECT [Benincasa hispida]2.6e-8392.86Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+S+NLTPRSFNSRPPFKL S FLGLQSNLRW+SPV+IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA+YDVKDVDGRTA+DRA NEEIKDFILN S K A
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

TrEMBL top hitse value%identityAlignment
A0A0A0L309 ANK_REP_REGION domain-containing protein2.6e-8999.4Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRA+NEEIKDFILNFSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

A0A1S3CJ75 protein LHCP TRANSLOCATION DEFECT1.9e-8797.02Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTA+DRALNEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

A0A5D3BT07 Protein LHCP TRANSLOCATION DEFECT1.9e-8797.02Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
        MASLSCT+SINLTPRSFNSRPPFKL SHFLGLQSNLRWLSP+SIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKM

Query:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTA+DRALNEEIKDFIL FSAKKA
Subjt:  EALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

A0A6J1EVN2 protein LHCP TRANSLOCATION DEFECT1.9e-7989.88Show/hide
Query:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCTS SINL+P S NSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK

A0A6J1JAV9 protein LHCP TRANSLOCATION DEFECT3.8e-8090.48Show/hide
Query:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        MAS+SCTS SINL+P SFNSRPP KLGS FLGLQSNLRW+SP++IGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDF RDDVEQYFNYMGMLAVEGTYDK
Subjt:  MASLSCTS-SINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK
        MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA N+EIKDFILNFS +K
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKK

SwissProt top hitse value%identityAlignment
A2YLX7 Protein LHCP TRANSLOCATION DEFECT1.8e-4760.57Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSP------VSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    +         + L WL P      V    S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSP------VSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

A3BKF2 Protein LHCP TRANSLOCATION DEFECT1.8e-4760.57Show/hide
Query:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSP------VSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV
        MAS+ CT  ++    S ++    +         + L WL P      V    S     TC+F    ++AEGAGIYGSQ RDDF+RDDVEQYFNYMGMLAV
Subjt:  MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSP------VSIGPSNGSRATCWFNL-RQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAV

Query:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        EGTYDKMEALL+QDIHPVDILLMLAASEGDKPKLEELLRAGA YDVKDVDGRTA+DRA  ++ ++FIL F+A  A
Subjt:  EGTYDKMEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

Q8VY88 Protein LHCP TRANSLOCATION DEFECT3.1e-5565.09Show/hide
Query:  SLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTA+DRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA

Arabidopsis top hitse value%identityAlignment
AT1G50900.1 Ankyrin repeat family protein2.2e-5665.09Show/hide
Query:  SLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK
        S SC  S+  +  S  S  P  L S FLG ++    + P  +GPSNGSR TCWF   +N   AE AGIYGSQSRDDF+RDDVEQYFNYMGMLAVEGTY K
Subjt:  SLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQN---AEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDK

Query:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA
        MEALL+ +IHPVDILLMLAA+EGD+PK+EELL+AGA Y VKD DGRTA+DRA +EEI+D IL +S +KA
Subjt:  MEALLSQDIHPVDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCCTCTCTTGTACTTCCTCCATTAATCTCACCCCAAGATCCTTCAATTCTCGCCCCCCTTTCAAATTGGGTTCCCATTTTCTTGGCCTTCAGTCCAACCTTCG
ATGGCTCTCACCCGTCTCCATTGGACCCTCCAATGGGTCTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAG
ATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAACTATATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCA
GTGGACATTTTGTTGATGCTGGCTGCCTCTGAAGGAGACAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAGTTATGATGTGAAAGATGTTGATGGTCGAACTGC
CGTTGATAGAGCACTTAACGAAGAAATTAAGGATTTTATTCTCAATTTTTCTGCTAAAAAGGCATGA
mRNA sequenceShow/hide mRNA sequence
TCTCCACCCGTTCGATTCCATCTTTCATGACTGTCAAAATTCATCCAACGTCCAAGATCTCCTCTGCAAAGAGTTACCCACAATCCTCACATACTCATTGGCCCACCGGA
TACCGAGTGGATGGATAGAACCTCCAAGATTGCGAGAGCAAAAGCTCACCCAAAACTTGCACAAACTCACCCATGGCTTCCCTCTCTTGTACTTCCTCCATTAATCTCAC
CCCAAGATCCTTCAATTCTCGCCCCCCTTTCAAATTGGGTTCCCATTTTCTTGGCCTTCAGTCCAACCTTCGATGGCTCTCACCCGTCTCCATTGGACCCTCCAATGGGT
CTAGAGCAACTTGCTGGTTCAATTTAAGGCAAAATGCCGAGGGTGCAGGCATTTATGGCAGCCAGTCCCGAGATGATTTCAACAGAGATGATGTTGAGCAGTATTTTAAC
TATATGGGAATGCTGGCTGTAGAAGGAACATATGACAAAATGGAAGCTCTTTTGAGCCAAGACATTCACCCAGTGGACATTTTGTTGATGCTGGCTGCCTCTGAAGGAGA
CAAACCAAAACTTGAGGAGCTATTGAGAGCTGGAGCTAGTTATGATGTGAAAGATGTTGATGGTCGAACTGCCGTTGATAGAGCACTTAACGAAGAAATTAAGGATTTTA
TTCTCAATTTTTCTGCTAAAAAGGCATGATTTTGGTTGGAAGTTGCTCTGTTTTGATAGGTTTTAGAAAGAGGCTTAAGATTTGTATTTTCACTGCCTTCTGATGTTGAT
CATATCGTGTTAAAAATTTATGCTTGTTTTTATCAATTAGGGAATGGCTTTGAGATGTAAAATCTTGTTTATAGTTGTTTACTGTTTTGATGTTTACGTTATCTTTAAAA
TTGTGTATTTAATCTTCTAAAAGTGATGGAAATTGAATTATTAAGGCTGTTTTGCAACTTTTTG
Protein sequenceShow/hide protein sequence
MASLSCTSSINLTPRSFNSRPPFKLGSHFLGLQSNLRWLSPVSIGPSNGSRATCWFNLRQNAEGAGIYGSQSRDDFNRDDVEQYFNYMGMLAVEGTYDKMEALLSQDIHP
VDILLMLAASEGDKPKLEELLRAGASYDVKDVDGRTAVDRALNEEIKDFILNFSAKKA