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CSPI03G05420 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G05420
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1
Genome locationChr3:4468753..4469723
RNA-Seq ExpressionCSPI03G05420
SyntenyCSPI03G05420
Gene Ontology termsGO:0010258 - NADH dehydrogenase complex (plastoquinone) assembly (biological process)
GO:0009570 - chloroplast stroma (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025435.1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 [Cucumis melo var. makuwa]3.9e-10696.24Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDP F ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_004152910.2 uncharacterized protein LOC101210146 [Cucumis sativus]8.1e-12099.57Show/hide
Query:  MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQ
        MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQ
Subjt:  MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQ

Query:  RKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLA
        RKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLA
Subjt:  RKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLA

Query:  MVKAAVKDETLSERLGQAKARCRQAILVANSF
        MVKAAVKDETLSERLGQAKARCRQAILVANSF
Subjt:  MVKAAVKDETLSERLGQAKARCRQAILVANSF

XP_008452345.1 PREDICTED: uncharacterized protein LOC103493403 [Cucumis melo]7.9e-10796.71Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDPNF ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

XP_038903492.1 uncharacterized protein LOC120090072 isoform X1 [Benincasa hispida]3.1e-9591.09Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPIL+LP S PSFTTPLQITSKR+ SIKCNSQ+SESDPNFPSPDPNF ALNQPE+FPIEKRRRS+I+RQR+P+T+IAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL DDGKVEERMVTELFRVLKLMEMD AMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  AR
        AR
Subjt:  AR

XP_038903493.1 uncharacterized protein LOC120090072 isoform X2 [Benincasa hispida]1.6e-9689.86Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPIL+LP S PSFTTPLQITSKR+ SIKCNSQ+SESDPNFPSPDPNF ALNQPE+FPIEKRRRS+I+RQR+P+T+IAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLM+REFGSTELLAKVGEIVAERAREEAEIL DDGKVEERMVTELFRVLKLMEMD AMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAI
        ARC   I
Subjt:  ARCRQAI

TrEMBL top hitse value%identityAlignment
A0A0A0L6D8 Uncharacterized protein3.9e-12099.57Show/hide
Query:  MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQ
        MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQ
Subjt:  MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQ

Query:  RKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLA
        RKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLA
Subjt:  RKPSTEIAKPEPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLA

Query:  MVKAAVKDETLSERLGQAKARCRQAILVANSF
        MVKAAVKDETLSERLGQAKARCRQAILVANSF
Subjt:  MVKAAVKDETLSERLGQAKARCRQAILVANSF

A0A1S3BT06 uncharacterized protein LOC1034934033.8e-10796.71Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDPNF ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A5D3C0F1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 11.9e-10696.24Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MASSHLHFLSTPNPILLLP SHPSFTTPLQITSKRDLSIK NSQDSESDPNFPSPDP F ALNQPETFPIEKRRRS+ILRQRKP+TEIAKPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1EVI2 uncharacterized protein LOC1114384544.8e-9484.98Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MA  HLH L  PNP+LLLP S P+FT PLQIT KR LS+KC+S+ SESDPNFPSP+P+FGALNQPE+FPIEKRRRS+I+RQR+PS +I KPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAVKDETLSERL QAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

A0A6J1JD53 uncharacterized protein LOC1114833068.2e-9484.04Show/hide
Query:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW
        MA  HLH L  PNP+LLLP S P+FT PLQIT KR LS+KC+S+ SESDPNFPSPDP+FGALNQPE+FP+EKRRRS+I+RQR+PS EI KPEPPNFEIGW
Subjt:  MASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGW

Query:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK
        KRTKEI++EKP+GWMIMDFLEKLE LMEREFGSTELLAKVGEIVAERAREEAEIL DDGKVE+RMVTELFRVLKLMEMDLAMVKAAV+DETL++RL QAK
Subjt:  KRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAK

Query:  ARCRQAILVANSF
        ARCRQAILVANSF
Subjt:  ARCRQAILVANSF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G51100.1 unknown protein1.6e-6066.02Show/hide
Query:  LSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFP-SPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEIS
        LS+ N  + +P    SF   ++ T+K   S KC+S     D     +P P        E FPIEKRRRS+I+R R     I KPEPPNFEIGWKRTKEI+
Subjt:  LSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFP-SPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKPEPPNFEIGWKRTKEIS

Query:  VEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAI
        +EKP G++IMDFLEK E LM REFGS ELLAK GEIVAERAREEAE+LRD+GKVEERMVTELFRVLKLMEMDLAMVKA+VKDETLS+R+ QA+ARCRQAI
Subjt:  VEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKARCRQAI

Query:  LVANSF
        LVANSF
Subjt:  LVANSF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAAAATAAAAAGAAGCTTATCTACTCTGTTTCATTCTTCACTCTCTTCTTTCATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTTCT
CCCTCCATCCCATCCCTCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCTCTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATCCC
CAGATCCCAACTTCGGCGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAAGAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGCCG
GAGCCACCCAACTTCGAAATCGGATGGAAAAGAACGAAAGAGATCAGTGTTGAGAAGCCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATGGA
GAGGGAATTTGGGTCGACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAGGGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAGAA
TGGTAACAGAGCTTTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGAAGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAGCA
AGGTGTAGACAAGCTATACTCGTTGCTAATTCTTTTTGA
mRNA sequenceShow/hide mRNA sequence
CAATGATCAAAATAAAAAGAAGCTTATCTACTCTGTTTCATTCTTCACTCTCTTCTTTCATGGCTTCCTCACACCTCCATTTCCTCTCTACTCCAAATCCCATTCTTCTT
CTCCCTCCATCCCATCCCTCTTTCACAACCCCATTACAAATCACATCAAAACGAGACCTCTCAATCAAATGCAACTCACAAGATTCCGAATCCGACCCCAATTTCCCATC
CCCAGATCCCAACTTCGGCGCCCTTAACCAACCTGAAACCTTCCCAATAGAGAAACGAAGAAGATCCGACATACTTCGGCAAAGAAAACCCTCAACAGAAATCGCAAAGC
CGGAGCCACCCAACTTCGAAATCGGATGGAAAAGAACGAAAGAGATCAGTGTTGAGAAGCCGATCGGGTGGATGATAATGGACTTTCTGGAAAAGTTAGAAGGGTTAATG
GAGAGGGAATTTGGGTCGACGGAGTTGCTAGCGAAAGTGGGAGAGATAGTGGCGGAAAGGGCGAGAGAGGAGGCGGAGATTTTGCGAGACGACGGCAAAGTGGAGGAGAG
AATGGTAACAGAGCTTTTTAGGGTTTTGAAATTGATGGAAATGGATTTGGCTATGGTGAAGGCGGCTGTGAAGGATGAGACATTGAGTGAACGGCTTGGTCAGGCTAAAG
CAAGGTGTAGACAAGCTATACTCGTTGCTAATTCTTTTTGAGTTATATAACAAATTGTTGAGGCAATTCATTTCTCTTTGTATAGTGTATCAGTCCATTTTTTTCACCCT
AATTCAAATTTAGTTTAGATTCTGCTTTGCATCGTGTGGTTTGTCCCTAATACATATTTCCCTTCTTCCAACTATCTGTTTGCTTTAATACCTCTTTGTGGATTTCTTGT
CGTTGCAAACAATAAGCAGAGAATATGAAAATACTGTTCATACTATTATTAGTACACAGAATTTTATGGATGTTAGGCCAAACAATATCAT
Protein sequenceShow/hide protein sequence
MIKIKRSLSTLFHSSLSSFMASSHLHFLSTPNPILLLPPSHPSFTTPLQITSKRDLSIKCNSQDSESDPNFPSPDPNFGALNQPETFPIEKRRRSDILRQRKPSTEIAKP
EPPNFEIGWKRTKEISVEKPIGWMIMDFLEKLEGLMEREFGSTELLAKVGEIVAERAREEAEILRDDGKVEERMVTELFRVLKLMEMDLAMVKAAVKDETLSERLGQAKA
RCRQAILVANSF