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CSPI03G05510 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G05510
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag-pol polyprotein
Genome locationChr3:4670022..4670523
RNA-Seq ExpressionCSPI03G05510
SyntenyCSPI03G05510
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042403.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.1e-0734.59Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ
        M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    KR D  G     +       GG  F H+ A+CP +LRKQ +
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ

Query:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT
         +   LSDEET    + D   +A I  +   D+
Subjt:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT

KGN56173.1 hypothetical protein Csa_010893 [Cucumis sativus]6.2e-6998.46Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFV
        MFCDERVEKKSKGLAFQVFSSKDQV+KKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFH KCPNYLRKQGQWYFV
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFV

Query:  MLSDEETHSCIDSDDEVHALIDKLVIHDTC
        MLSDEETHSCIDSDDEVHALIDKLVIHDTC
Subjt:  MLSDEETHSCIDSDDEVHALIDKLVIHDTC

TYJ95661.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]3.2e-0431.5Show/hide
Query:  ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVK------------NVGSSGGNKFKHFHAKCPNYLR
        +R  KK KG+AF+     ++ +   +++  N+ ESI+LL ++F  A ++  K ++      D Y+K              GS G     H+ A+CP +LR
Subjt:  ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVK------------NVGSSGGNKFKHFHAKCPNYLR

Query:  KQGQWYFVMLSDEETHSCIDSDDEVHA
        KQ   + V LSDEE+    D DD ++A
Subjt:  KQGQWYFVMLSDEETHSCIDSDDEVHA

TYK00987.1 gag-pol polyprotein [Cucumis melo var. makuwa]3.1e-0734.59Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ
        M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    KR D  G     +       GG  F H+ A+CP +LRKQ +
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ

Query:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT
         +   LSDEET    + D   +A I  +   D+
Subjt:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT

TYK01287.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]2.4e-0429.86Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYV---------DPYVKNVGSSGGNKFK------HFHA
        M    R +KK KG+AF++   ++    K TN   N+ ESI+LL   F +  K   + ++  G  V         D   K        K++      H+ A
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYV---------DPYVKNVGSSGGNKFK------HFHA

Query:  KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT
        KCP YLRKQ + +     DEE+    + D+  +A I +L  HD+
Subjt:  KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT

TrEMBL top hitse value%identityAlignment
A0A0A0L327 Uncharacterized protein3.0e-6998.46Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFV
        MFCDERVEKKSKGLAFQVFSSKDQV+KKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFH KCPNYLRKQGQWYFV
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFV

Query:  MLSDEETHSCIDSDDEVHALIDKLVIHDTC
        MLSDEETHSCIDSDDEVHALIDKLVIHDTC
Subjt:  MLSDEETHSCIDSDDEVHALIDKLVIHDTC

A0A5A7SWB7 Gag-proteinase polyprotein1.5e-0431.5Show/hide
Query:  ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVK------------NVGSSGGNKFKHFHAKCPNYLR
        +R  KK KG+AF+     ++ +   +++  N+ ESI+LL ++F  A ++  K ++      D Y+K              GS G     H+ A+CP +LR
Subjt:  ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVK------------NVGSSGGNKFKHFHAKCPNYLR

Query:  KQGQWYFVMLSDEETHSCIDSDDEVHA
        KQ   + V LSDEE+    D DD ++A
Subjt:  KQGQWYFVMLSDEETHSCIDSDDEVHA

A0A5A7TGP5 Gag-pol polyprotein1.5e-0734.59Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ
        M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    KR D  G     +       GG  F H+ A+CP +LRKQ +
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ

Query:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT
         +   LSDEET    + D   +A I  +   D+
Subjt:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT

A0A5D3BNW5 Gag-pol polyprotein1.5e-0734.59Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ
        M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    KR D  G     +       GG  F H+ A+CP +LRKQ +
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----KRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQ

Query:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT
         +   LSDEET    + D   +A I  +   D+
Subjt:  WYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT

A0A5D3BPP2 Gag-proteinase polyprotein1.2e-0429.86Show/hide
Query:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYV---------DPYVKNVGSSGGNKFK------HFHA
        M    R +KK KG+AF++   ++    K TN   N+ ESI+LL   F +  K   + ++  G  V         D   K        K++      H+ A
Subjt:  MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYV---------DPYVKNVGSSGGNKFK------HFHA

Query:  KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT
        KCP YLRKQ + +     DEE+    + D+  +A I +L  HD+
Subjt:  KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHALIDKLVIHDT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGC
TGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTA
GCAGTGGCGGGAACAAGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGT
ATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGC
TGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTA
GCAGTGGCGGGAACAAGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGT
ATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA
Protein sequenceShow/hide protein sequence
MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSC
IDSDDEVHALIDKLVIHDTC