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CSPI03G06060 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G06060
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description60S ribosomal protein L21
Genome locationChr3:5195098..5195673
RNA-Seq ExpressionCSPI03G06060
SyntenyCSPI03G06060
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001147 - Ribosomal protein L21e
IPR008991 - Translation protein SH3-like domain superfamily
IPR036948 - Ribosomal protein L21 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6580788.1 60S ribosomal protein L21-1, partial [Cucurbita argyrosperma subsp. sororia]2.2e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

XP_022934302.1 60S ribosomal protein L21-1 [Cucurbita moschata]2.2e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

XP_022934303.1 60S ribosomal protein L21-1-like [Cucurbita moschata]2.2e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

XP_022983129.1 60S ribosomal protein L21-1-like [Cucurbita maxima]2.2e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

XP_038906379.1 60S ribosomal protein L21-1 [Benincasa hispida]4.9e-3265.79Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  ++  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

TrEMBL top hitse value%identityAlignment
A0A6J1F2B9 60S ribosomal protein L21-11.1e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

A0A6J1F7A4 60S ribosomal protein L21-1-like1.1e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

A0A6J1IYF0 60S ribosomal protein L21-11.1e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

A0A6J1J6F8 60S ribosomal protein L21-1-like1.1e-3266.67Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  +R  +  R+             LRKVKND  K EAKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

A0A6J1KU90 60S ribosomal protein L21-2-like6.9e-3264.91Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT RVWNVTK AI +EINKQ+ +  ++  +  R+             LRKVKND  K +AKAKGE+ICTKRQPEGPKPGFMVEGALMET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

SwissProt top hitse value%identityAlignment
P46778 60S ribosomal protein L215.5e-1039.81Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK-NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHK YHG+T RV+NVT+ A+ I +NKQ++   L   +  R+ +I         L++VK ND  K EAK KG  +  KRQP  P+    V     E   L
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK-NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPL
         P+
Subjt:  IPL

P49666 60S ribosomal protein L215.5e-1039.81Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK-NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHK YHG+T RV+NVT+ A+ I +NKQ++   L   +  R+ +I         L++VK ND  K EAK KG  +  KRQP  P+    V     E   L
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK-NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPL
         P+
Subjt:  IPL

Q43291 60S ribosomal protein L21-11.4e-2957.89Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK KND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

Q6QN05 60S ribosomal protein L215.5e-1039.81Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK-NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHK YHG+T RV+NVT+ A+ I +NKQ++   L   +  R+ +I         L++VK ND  K EAK KG  +  KRQP  P+    V     E   L
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM-YIS--------LRKVK-NDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPL
         P+
Subjt:  IPL

Q9FDZ9 60S ribosomal protein L21-22.1e-3057.89Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK +NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

Arabidopsis top hitse value%identityAlignment
AT1G09590.1 Translation protein SH3-like family protein9.8e-3157.89Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK KND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

AT1G09690.1 Translation protein SH3-like family protein9.8e-3157.89Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK KND  K  AKA GE I TKRQP+GPKPGFMVEG  +ET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

AT1G57660.1 Translation protein SH3-like family protein1.5e-3157.89Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK +NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY

AT1G57860.1 Translation protein SH3-like family protein1.5e-3157.89Show/hide
Query:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL
        MPHKFYHGRT R+WNVTK A+ +E+NKQI +  +R  +  R+             LRK +NDV K +AKA+GE I TKRQP+GPKPGFMVEG  +ET+T 
Subjt:  MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRM----------YISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTL

Query:  IPLHDVVNDFKGGY
        IP +DVVND KGGY
Subjt:  IPLHDVVNDFKGGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCATAAATTTTACCACGGTCGCACAAGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCATCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGT
TCTAGTTTTTAGAATGTACATAAGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCC
CTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTACATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCATAAATTTTACCACGGTCGCACAAGTCGCGTATGGAATGTTACAAAGTGTGCCATCAGCATCGAGATTAACAAGCAGATTCAGGATTCTTTTTTAAGATATGT
TCTAGTTTTTAGAATGTACATAAGCTTGAGGAAGGTGAAGAATGACGTGCCGAAGGACGAAGCCAAGGCCAAAGGTGAAATCATCTGCACCAAGAGGCAACCAGAAGGCC
CTAAACCAGGGTTCATGGTTGAAGGTGCTTTAATGGAGACTATGACTCTTATTCCATTACATGATGTTGTCAATGATTTCAAGGGTGGCTATTAG
Protein sequenceShow/hide protein sequence
MPHKFYHGRTSRVWNVTKCAISIEINKQIQDSFLRYVLVFRMYISLRKVKNDVPKDEAKAKGEIICTKRQPEGPKPGFMVEGALMETMTLIPLHDVVNDFKGGY