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CSPI03G06320 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G06320
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationChr3:5479087..5479466
RNA-Seq ExpressionCSPI03G06320
SyntenyCSPI03G06320
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0009908 - flower development (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005840 - ribosome (cellular component)
GO:1990904 - ribonucleoprotein complex (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAK52561.1 Putative retroelement pol polyprotein [Oryza sativa Japonica Group]9.7e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG+ ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
AAR87163.1 putative polyprotein [Oryza sativa Japonica Group]4.3e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG++ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
ASR75372.1 retrotransposon protein [Oryza nivara]4.3e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG++ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
KAA0043332.1 reverse trancriptase [Cucumis melo var. makuwa]9.7e-1264.41Show/hide
Query:  DDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEK
        DDMLLAR SK D+  VKT L +EFD+K+LGES++ILGIDI R+R + TL+I+QS YC K
Subjt:  DDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEK
XP_038875001.1 uncharacterized protein LOC120067522 [Benincasa hispida]5.1e-1357.89Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LL+YVDDMLL   SK DLTHVK LL  EF +KDL E+ K+LGI+I R++ +S L INQS YCEK    +FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
TrEMBL top hitse value%identityAlignment
A0A2I4S661 Retrotransposon protein2.1e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG++ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
A0A5A7TJ59 Reverse trancriptase4.7e-1264.41Show/hide
Query:  DDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEK
        DDMLLAR SK D+  VKT L +EFD+K+LGES++ILGIDI R+R + TL+I+QS YC K
Subjt:  DDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEK
Q10FH9 Integrase core domain containing protein2.1e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG++ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
Q10K48 Putative retroelement pol polyprotein4.7e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG+ ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
Q75HA9 Retrotransposon protein, putative, Ty1-copia subclass2.1e-1253.95Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
        ++LLLYVDDML+A  SKE +T +K  LS EFD+KDLG ++KILG++ITRDRN   L ++Q +Y +K   ++FN+ D
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLD
SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-0844.59Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNV
        + LLLYVDDML+    K  +  +K  LSK FD+KDLG +++ILG+ I R+R    L ++Q  Y E+   E+FN+
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNV
Arabidopsis top hitse value%identityAlignment
ATMG00810.1 DNA/RNA polymerases superfamily protein2.7e-0442.42Show/hide
Query:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEK
        ++LLLYVDD+LL  SS   L  +   LS  F +KDLG     LGI I    + S L ++Q+ Y E+
Subjt:  VFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTCTTGCTACTATATGTCGATGATATGCTCCTTGCCAGAAGCTCTAAGGAAGATTTGACTCATGTCAAAACTCTTTTAAGTAAAGAGTTTGACATCAAGGATTT
GGGAGAATCAAGGAAGATCCTAGGAATTGACATCACAAGAGATAGAAACCAATCCACATTAAGCATCAATCAATCAACCTACTGTGAGAAGCCAAGTAGTGAGAAGTTTA
ATGTACTTGATGATCTCTACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTCTTGCTACTATATGTCGATGATATGCTCCTTGCCAGAAGCTCTAAGGAAGATTTGACTCATGTCAAAACTCTTTTAAGTAAAGAGTTTGACATCAAGGATTT
GGGAGAATCAAGGAAGATCCTAGGAATTGACATCACAAGAGATAGAAACCAATCCACATTAAGCATCAATCAATCAACCTACTGTGAGAAGCCAAGTAGTGAGAAGTTTA
ATGTACTTGATGATCTCTACTAG
Protein sequenceShow/hide protein sequence
MVFLLLYVDDMLLARSSKEDLTHVKTLLSKEFDIKDLGESRKILGIDITRDRNQSTLSINQSTYCEKPSSEKFNVLDDLY