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CSPI03G06350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G06350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag protease polyprotein
Genome locationChr3:5497560..5497973
RNA-Seq ExpressionCSPI03G06350
SyntenyCSPI03G06350
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037409.1 hypothetical protein E6C27_scaffold278G001210 [Cucumis melo var. makuwa]1.2e-0643.3Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+GIT CCASF  TRL+  S R TRL C   G  RLI            C+LRDH+TV+ + KV+   DR+  +   + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

KAA0040453.1 pol protein [Cucumis melo var. makuwa]3.3e-0947.42Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+ IT CCASFG TRL+ AS   TRL C   G  RLI            C+LRDH+TV+ + KV+  ADR+GT+R  + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

KAA0063968.1 Retrotransposon protein, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.6e-0954.79Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMG
        VS+GIT C ASFG TRL   S R TRL C  FG  RL  +C+LRDH+TVM   K++  ADR+G +R    HMG
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMG

TYJ97504.1 pol protein [Cucumis melo var. makuwa]1.2e-0643.3Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+GIT CCASF  TRL+  S R TRL C   G  RLI            C+LRDH+TV+ + KV+   DR+  +   + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

TYK28901.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.3e-0947.42Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+ IT CCASFG TRL+ AS   TRL C   G  RLI            C+LRDH+TV+ + KV+  ADR+GT+R  + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

TrEMBL top hitse value%identityAlignment
A0A5A7T7Q9 Uncharacterized protein5.7e-0743.3Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+GIT CCASF  TRL+  S R TRL C   G  RLI            C+LRDH+TV+ + KV+   DR+  +   + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

A0A5A7TBK0 Pol protein1.6e-0947.42Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+ IT CCASFG TRL+ AS   TRL C   G  RLI            C+LRDH+TV+ + KV+  ADR+GT+R  + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

A0A5D3BEM4 Pol protein5.7e-0743.3Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+GIT CCASF  TRL+  S R TRL C   G  RLI            C+LRDH+TV+ + KV+   DR+  +   + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

A0A5D3BZL0 Retrotransposon protein, Ty3-gypsy subclass4.7e-0954.79Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMG
        VS+GIT C ASFG TRL   S R TRL C  FG  RL  +C+LRDH+TVM   K++  ADR+G +R    HMG
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMG

A0A5D3DZF2 Ty3-gypsy retrotransposon protein1.6e-0947.42Show/hide
Query:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV
        VS+ IT CCASFG TRL+ AS   TRL C   G  RLI            C+LRDH+TV+ + KV+  ADR+GT+R  + HMG +F  +L L  F V
Subjt:  VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLI-----------MCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GTGTCCCATGGGATCACCATCTGTTGTGCATCATTTGGAGGCACTAGATTGATAGGTGCATCCTTCAGGAGCACTAGACTGACATGTGCATTCTTCGGGGGCATTAGATT
GATTATGTGCATCCTACGGGATCACAAGACTGTTATGACGAAGGAAAAAGTAATATGTGGAGCAGATCGACAAGGGACAAAAAGGACGTGTGATTGCCATATGGGAACGC
TCTTTCAAAATTTGCTTTCGCTTCCAGCTTTTAATGTTTTAGTGTTTCTCTGTAATATTGATGATTTAAAAAGGTTTCATGTTTAG
mRNA sequenceShow/hide mRNA sequence
GTGTCCCATGGGATCACCATCTGTTGTGCATCATTTGGAGGCACTAGATTGATAGGTGCATCCTTCAGGAGCACTAGACTGACATGTGCATTCTTCGGGGGCATTAGATT
GATTATGTGCATCCTACGGGATCACAAGACTGTTATGACGAAGGAAAAAGTAATATGTGGAGCAGATCGACAAGGGACAAAAAGGACGTGTGATTGCCATATGGGAACGC
TCTTTCAAAATTTGCTTTCGCTTCCAGCTTTTAATGTTTTAGTGTTTCTCTGTAATATTGATGATTTAAAAAGGTTTCATGTTTAG
Protein sequenceShow/hide protein sequence
VSHGITICCASFGGTRLIGASFRSTRLTCAFFGGIRLIMCILRDHKTVMTKEKVICGADRQGTKRTCDCHMGTLFQNLLSLPAFNVLVFLCNIDDLKRFHV