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CSPI03G06950 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G06950
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag-pol fusion protein
Genome locationChr3:6200839..6201165
RNA-Seq ExpressionCSPI03G06950
SyntenyCSPI03G06950
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0068098.1 hypothetical protein E6C27_scaffold238G00560 [Cucumis melo var. makuwa]6.9e-0540.45Show/hide
Query:  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRL
        ST  ST KMPK HL+AW P S  I  N  H AY HG QC+M  +F C               PT+        L  L MP  PN ++RL
Subjt:  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRL

KGN56322.1 hypothetical protein Csa_010482 [Cucumis sativus]1.1e-5398.15Show/hide
Query:  MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSS
        MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSS
Subjt:  MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSS

Query:  RLAHHQNV
        RLAHHQNV
Subjt:  RLAHHQNV

TrEMBL top hitse value%identityAlignment
A0A0A0L6V7 Uncharacterized protein5.1e-5498.15Show/hide
Query:  MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSS
        MEKLF KKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQL YLTMPLPPNFSS
Subjt:  MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSS

Query:  RLAHHQNV
        RLAHHQNV
Subjt:  RLAHHQNV

A0A5A7TG48 Gag-pol fusion protein8.2e-0459.52Show/hide
Query:  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP
        T+KS +KM  HHLVAW PN   I LN  HSA SH SQC++ P
Subjt:  TSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSP

A0A5A7VJU1 Uncharacterized protein3.3e-0540.45Show/hide
Query:  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRL
        ST  ST KMPK HL+AW P S  I  N  H AY HG QC+M  +F C               PT+        L  L MP  PN ++RL
Subjt:  STSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCAT
AACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAG
CTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAAAGCTCTTCCCCAAGAAGAAGAGTTTGAAGATGTCTACCTCAAAGAGCACTAGTAAAATGCCTAAGCATCACTTGGTCGCATGGCTTCCAAATTCATATCTCAT
AACTTTGAACAAAGTCCACTCAGCTTACTCACATGGGTCCCAATGTGTCATGTCGCCTACCTTCTCGTGTGGCCCTTACTCTCGTGCCTTGCCTTGGCCGCATTTTGTAG
CTCGCCCAACATATCTTCCTCAGTTAGCCAAGCCTCAACTTTCTTACTTAACTATGCCTTTGCCACCCAACTTTTCATCTCGCTTAGCACACCATCAAAATGTCTAG
Protein sequenceShow/hide protein sequence
MEKLFPKKKSLKMSTSKSTSKMPKHHLVAWLPNSYLITLNKVHSAYSHGSQCVMSPTFSCGPYSRALPWPHFVARPTYLPQLAKPQLSYLTMPLPPNFSSRLAHHQNV