CuGenDBv2

Gene ID	CSPI03G06960
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	cytochrome c oxidase subunit 6a, mitochondrial
Genome location	Chr3:6203560..6208647
RNA-Seq Expression	CSPI03G06960
Synteny	CSPI03G06960
Gene Ontology terms	GO:0006123 - mitochondrial electron transport, cytochrome c to oxygen (biological process) GO:0050790 - regulation of catalytic activity (biological process) GO:1902600 - proton transmembrane transport (biological process) GO:0005751 - mitochondrial respiratory chain complex IV (cellular component) GO:0004129 - cytochrome-c oxidase activity (molecular function) GO:0030234 - enzyme regulator activity (molecular function)
InterPro domains	IPR001349 - Cytochrome c oxidase, subunit VIa IPR036418 - Cytochrome c oxidase, subunit VIa superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008450167.1 PREDICTED: cytochrome c oxidase subunit 6a, mitochondrial [Cucumis melo]

4.2e-49

97.96

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

XP_011650608.1 cytochrome c oxidase subunit 6a, mitochondrial isoform X2 [Cucumis sativus]

6.4e-50

100

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

XP_022929363.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita moschata]

3.9e-47

93.88

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

XP_023551866.1 cytochrome c oxidase subunit 6a, mitochondrial-like [Cucurbita pepo subsp. pepo]

1.3e-47

94.9

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMA+IRSNLLRAALRGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

XP_038905594.1 cytochrome c oxidase subunit 6a, mitochondrial [Benincasa hispida]

6.0e-48

94.9

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMASIRSNLLRAA+RGASRNS QPKRGFASSAHDDARETAKWEKITYAGI TC+ILAFYNLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L3I0 Uncharacterized protein

2.6e-49

100

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Query:  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
Subjt:  MASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

A0A1S3BPM0 cytochrome c oxidase subunit 6a, mitochondrial

2.0e-49

97.96

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMASIRSN LRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

A0A6J1ERW3 cytochrome c oxidase subunit 6a, mitochondrial-like

1.9e-47

93.88

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMA+IRSNLLRAA RGASRNS QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

A0A6J1J8L1 cytochrome c oxidase subunit 6a, mitochondrial-like

1.2e-46

92.86

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMA IRSNLLRAA RGASRN  QPKRGFASSAHDDARETAKWEKITYAGIV+CSILAFYNLSKGHPH+EEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

A0A6J1KMD3 cytochrome c oxidase subunit 6a, mitochondrial-like

4.6e-46

90.82

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MAMA+IRSNLLRAA+RGASRNS QPKRGFASSAHDDA ETAKWEKITYAGI  C+ LAFYNLSKGHPHHEEPPAYPY+HIRNKEFPWGPDGLFEVKHH
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

SwissProt top hits

e value

%identity

Alignment

Q9T070 Cytochrome c oxidase subunit 6a, mitochondrial

1.5e-33

70.71

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA Y LSKGH H E+PPAYP+MHIRNKEFPWGPDGLFEVKH+
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

Arabidopsis top hits

e value

%identity

Alignment

AT4G37830.1 cytochrome c oxidase-related

1.1e-34

70.71

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA Y LSKGH H E+PPAYP+MHIRNKEFPWGPDGLFEVKH+
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

AT4G37830.2 cytochrome c oxidase-related

4.0e-26

61.62

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Query:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH
        MA A +RS L RA  R A + SV PKR F+SSA HDDA E AKWEKITY GI +C+ LA Y LSKGH H E+PP          EFPWGPDGLFEVKH+
Subjt:  MAMASIRSNLLRAALRGASRNSVQPKRGFASSA-HDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

Sequences

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CDS sequence

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ATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCTCTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGC
TCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCTATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTG
CATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTCCTGATGGTCTCTTTGAGGTGAAGCACCACTGA

mRNA sequence

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GGGCTTGGTCATTTCGTGGACTCGGCAATTTGTGAGAGAGAGAACCAAAGACAAAATGGCAATGGCGTCGATCCGATCCAATCTTCTTCGCGCCGCCCTACGCGGTGCCT
CTCGAAACTCCGTTCAGCCTAAACGCGGCTTTGCTTCCTCTGCTCACGACGACGCTCGTGAAACGGCAAAGTGGGAGAAGATTACTTATGCAGGCATTGTAACCTGCTCT
ATTTTAGCATTCTATAATCTATCAAAGGGCCACCCCCACCATGAAGAGCCCCCTGCATATCCATATATGCACATACGCAATAAAGAGTTTCCTTGGGGTCCTGATGGTCT
CTTTGAGGTGAAGCACCACTGAGAATTACTCTTGGGTTCAAAAAGCGGATCAGAGTTCTCATTCCTGTTCCATATCAGAAAGACTTCATGGACTGGTTGGTTTAGATTTT
TTTCTCTGCAAAGGAAAAGCCATGGCATGGCCATTTTGCATTTGTTTAAATGCTATCAGAATATTATGTGAATCGTTTAATTTTTTTCTGTCACAGCCATCCTTCCTGAT
TAATAAGATAAACTTTCTTTCCATTGTCCTGAAAGGTTTGCAGTAAGGTGTGCTTGGATTGAAAAATGAGCTTGTATAACTACCGGTACTTAATGGGTAATAATTATTAC
TTGGGTGAACTACAACAATTACTACGTTTTATCAACACAGTTGGATCATTCTCATAGTTTAAATTGTAAACCGAACATGGTTTATGTTTTTTTTTTTTTTCTAATTAAAA
GATAATATGTTTATATAATAAGAAGTACTATATTTCTAAAGGGGTTTTAAAAAA

Protein sequence

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MAMASIRSNLLRAALRGASRNSVQPKRGFASSAHDDARETAKWEKITYAGIVTCSILAFYNLSKGHPHHEEPPAYPYMHIRNKEFPWGPDGLFEVKHH

CSPI03G06960 (gene) of Cucumber (PI 183967) v1 genome