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CSPI03G09290 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G09290
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionhistone deacetylase complex subunit SAP18
Genome locationChr3:7577484..7579877
RNA-Seq ExpressionCSPI03G09290
SyntenyCSPI03G09290
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049010.1 histone deacetylase complex subunit SAP18 [Cucumis melo var. makuwa]1.0e-7597.99Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSF
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSF
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSF

Query:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_004133896.1 histone deacetylase complex subunit SAP18 isoform X2 [Cucumis sativus]1.7e-78100Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_008438121.1 PREDICTED: histone deacetylase complex subunit SAP18 [Cucumis melo]4.2e-7798.65Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_031737715.1 histone deacetylase complex subunit SAP18 isoform X1 [Cucumis sativus]2.1e-7695.48Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLRE-------VGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLRE       VGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLRE-------VGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

XP_038879427.1 histone deacetylase complex subunit SAP18 [Benincasa hispida]7.3e-7495.95Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG  PRA+HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGN RLDDSLAL ELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

TrEMBL top hitse value%identityAlignment
A0A0A0L6C9 Uncharacterized protein8.2e-79100Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A1S3AVL4 histone deacetylase complex subunit SAP182.0e-7798.65Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A5A7U0S8 Histone deacetylase complex subunit SAP185.0e-7697.99Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSF
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL VKEVAPEARRRNAKLSF
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDL-VKEVAPEARRRNAKLSF

Query:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  ALVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A5D3D2K7 Histone deacetylase complex subunit SAP182.0e-7798.65Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRATHAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

A0A6J1IFF7 histone deacetylase complex subunit SAP18-like7.9e-7494.59Show/hide
Query:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
        MAGEAEAPRRAYG PPRA HAPPRPRLEPVDREKTCPLLLRVFTK GSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA
Subjt:  MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFA

Query:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII
        LVYPDRHGRFV+REVGKTFSFGN R DD+LAL ELGFQIGDYLDVAII
Subjt:  LVYPDRHGRFVLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP181.5e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

O55128 Histone deacetylase complex subunit SAP182.0e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

O64644 Histone deacetylase complex subunit SAP187.7e-5068.67Show/hide
Query:  AEAPRRAYGG-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  GG     PPR  +  PPRP+ EPVDREKTCPLLLRVFTK+G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGG-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI
        FA VYP+  G + +REVG+T ++ NR+  DDS  L EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI

Q3T022 Histone deacetylase complex subunit SAP181.5e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

Q5RDT5 Histone deacetylase complex subunit SAP181.5e-2953.72Show/hide
Query:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL
        +P+DREKTCPLLLRVFT     H   D   RG  P  E+QIYTW DATL+ELT LVKEV PEAR++    +FA+V+ D +   + ++E+G T S G +  
Subjt:  EPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPD-RHGRFVLREVGKTFSFGNRRL

Query:  DDSLALGELGFQIGDYLDVAI
        DDS+ L    FQIGDYLD+AI
Subjt:  DDSLALGELGFQIGDYLDVAI

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P185.5e-5168.67Show/hide
Query:  AEAPRRAYGG-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  GG     PPR  +  PPRP+ EPVDREKTCPLLLRVFTK+G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGG-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI
        FA VYP+  G + +REVG+T ++ NR+  DDS  L EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI

AT2G45640.2 SIN3 associated polypeptide P181.9e-4867.33Show/hide
Query:  AEAPRRAYGG-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS
        AEA RR  GG     PPR  +  PPRP+ EPVDREKTCPLLLRVFTK+G HH +ED+AVRGKEP+DEVQIYTWKDA+LRELTDLVKEV+  ARRRNA+LS
Subjt:  AEAPRRAYGG-----PPRATH-APPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLS

Query:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI
        FA VYP+  G +    VG+T ++ NR+  DDS  L EL F+IGDYLDVAI
Subjt:  FALVYPDRHGRFVLREVGKTFSFGNRRL-DDSLALGELGFQIGDYLDVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGGTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGGGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTCACGAAGACTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATG
CTACGCTTCGCGAACTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTTTCCTTTGCTTTGGTTTATCCCGATAGACATGGTCGGTTT
GTATTGAGAGAGGTAGGGAAGACATTCTCGTTTGGAAATAGACGATTAGACGATAGCTTGGCTTTGGGAGAACTTGGTTTTCAGATTGGAGATTACTTGGATGTGGCAAT
CATATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGGGAGAAGCCGAAGCACCAAGGAGGGCTTATGGCGGTCCTCCAAGAGCAACTCATGCTCCTCCTCGTCCTCGTTTGGAGCCCGTTGATCGGGAAAAGACTTGTCC
TTTGCTGCTTCGTGTTTTCACGAAGACTGGGAGTCATCATTTCAATGAAGACTTCGCTGTGAGGGGCAAGGAGCCGAGGGATGAGGTTCAAATTTATACCTGGAAAGATG
CTACGCTTCGCGAACTAACTGATCTGGTCAAAGAGGTAGCTCCAGAAGCCAGGAGAAGAAATGCTAAACTTTCCTTTGCTTTGGTTTATCCCGATAGACATGGTCGGTTT
GTATTGAGAGAGGTAGGGAAGACATTCTCGTTTGGAAATAGACGATTAGACGATAGCTTGGCTTTGGGAGAACTTGGTTTTCAGATTGGAGATTACTTGGATGTGGCAAT
CATATAGGGTATGTGGTGCGTTTATATACTAATAATGCCTATGGTGAAGAACAAAACGAATGAGGATATTAGCTTCTTCAATCTTGTAATGTATATTCCATTTAAGAATT
GGTTGAAAATCCTTTACCTTGTATGTCTTCTTCCCCTGTGCCATAGGAGGTAGATCGTGATTAGTCATTGTCACGTTCATTTGAGTTACCTTCTTGATGTATTGCATTGG
TGTGGTGGATGAAATGAACCAGGCCTTATGATAGCGTTTCGTTAGGATGATAATGGTGGAACTATTTTAGGCCTACGATTACATTAACATGAGTTTCTTTTTATAAAAAT
TAAAGCGTTTGTTGCA
Protein sequenceShow/hide protein sequence
MAGEAEAPRRAYGGPPRATHAPPRPRLEPVDREKTCPLLLRVFTKTGSHHFNEDFAVRGKEPRDEVQIYTWKDATLRELTDLVKEVAPEARRRNAKLSFALVYPDRHGRF
VLREVGKTFSFGNRRLDDSLALGELGFQIGDYLDVAII