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CSPI03G11730 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G11730
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description50S ribosomal protein L28
Genome locationChr3:9091715..9092677
RNA-Seq ExpressionCSPI03G11730
SyntenyCSPI03G11730
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134049.1 50S ribosomal protein L28, chloroplastic [Cucumis sativus]7.4e-7499.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISP+SISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_008438484.1 PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]8.5e-7094.67Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISPS IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]2.2e-6288Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISPS IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]5.5e-6186.67Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  + SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLIS S IS APLRP+LQPVARR+CPFTGKKAN+KNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]5.9e-6390Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAA VV GFTP AT SGVM  SSTKL F TKPNS+LGFLTSQL+GI+ISSNHSLISPS IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein3.6e-7499.33Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISP+SISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic4.1e-7094.67Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISPS IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L284.1e-7094.67Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT +GVM TSSTKLHFRTKPNSDLGFL SQLSGI+ISSNHSLISPS IS APLRPSLQP+ARRICPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic3.0e-6086Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  + SGVM  SS+KLHFR+K N +LGFL+SQLSGI+ISSNHSLIS S IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic1.1e-6288Show/hide
Query:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP ++ SGVM  SS+KLHFRTKPN +LGFL+SQLSGI+ISSNHSLISPS IS APLRP+LQPVARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L284.9e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic9.2e-4371.32Show/hide
Query:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA
        MT+S+  +   T  + +LGFLTSQLSG+RIS      +PS +    + P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEA
Subjt:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA

Query:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic2.9e-4474.59Show/hide
Query:  RTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL
        ++K +S+L F+TSQLSG++ISS H  IS S+  + P +PSLQPVARRICPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+
Subjt:  RTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic3.4e-4570.34Show/hide
Query:  SGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNL
        SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +      S   +APL+PSLQPVARRICPFTGKK+NK N VS SNHKTK+LQFVNL
Subjt:  SGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNL

Query:  QYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L282.9e-2062.67Show/hide
Query:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        R+C  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family6.5e-4471.32Show/hide
Query:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA
        MT+S+  +   T  + +LGFLTSQLSG+RIS      +PS +    + P  P +QP VARRICPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEA
Subjt:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSI---STAPLRPSLQP-VARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA

Query:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCTCAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGG
GTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCTCTTCCATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTC
GTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATCGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
AAACGCTCTTCCCATTTTACAAAGATAAACTCAATCGGTAACAATGGCAGCTTCTGTTGTCTTTGGCTTCACGCCGGCGGCCACTTGTTCCGGTGTAATGACAACCTCCT
CAACCAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGGGTTCCTCACTTCTCAATTGAGCGGCATCAGAATCTCCTCCAACCACTCACTCATCTCCCCCTCTTCC
ATTTCTACTGCTCCTCTCAGGCCTTCCCTTCAACCTGTTGCTCGTAGAATTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAA
GACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTTTGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATCGAGA
AGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCTTCGTAAAGAATGATATGGTAATTCATGACACTCAATCTTAACTCATTTAGAATTTGAGGAAGATTTG
TTTGTATTCCTGCTGTTTTTGCCTCTTCTTGTTGTTAGTCATCTGTTTATTTTTCATGGTCACAGTATTCTTGTATCTTTGCTTTCCTTCCTCCATTTGTCAATGAAGCT
GAAAAATCCATCCCCTTTCCCTTCTGGGTTTTCTGAATGTTACATTTTCTTAGAAGTTCAGCTAAAA
Protein sequenceShow/hide protein sequence
MAASVVFGFTPAATCSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIRISSNHSLISPSSISTAPLRPSLQPVARRICPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKV
WWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE