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CSPI03G12250 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G12250
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionAT-hook motif nuclear-localized protein 20-like
Genome locationChr3:9360819..9361356
RNA-Seq ExpressionCSPI03G12250
SyntenyCSPI03G12250
Gene Ontology termsGO:0005622 - intracellular (cellular component)
InterPro domainsIPR040381 - Uncharacterized protein At4g14450-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049279.1 hypothetical protein E6C27_scaffold171G005190 [Cucumis melo var. makuwa]1.0e-3988.78Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        MSDAERKTA   APTRLQSQAPASIEIKR L+WNV IPLLSPLVSPSSCGNS PEK+LSMA+NNAREE KGLTFTKWQHPAAPFYYEPVPRAN FVPV
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
KAE8650334.1 hypothetical protein Csa_009641 [Cucumis sativus]3.9e-47100Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
KAG6582368.1 AT-hook motif nuclear-localized protein 20, partial [Cucurbita argyrosperma subsp. sororia]6.9e-2061.22Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        M+ +ER+      PTRLQSQAPASI I RA NWNVAIPLL+PLVS S CGNS+ + +L M EN AREE      TKWQHPA P Y  P+P   PFVPV
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
XP_022924297.1 AT-hook motif nuclear-localized protein 20-like [Cucurbita moschata]4.1e-2065.91Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEP
        M+ +ER+      PTRLQSQAPASI I RA NWNVAIPLL+PLVS S CGNS+ + +L M EN AREETKGL  TKWQHPA PF   P
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEP
XP_023526926.1 AT-hook motif nuclear-localized protein 20-like [Cucurbita pepo subsp. pepo]1.1e-2067.05Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEP
        M+ +ER+      PTRLQSQAPASI I RA NWNVAIPLL+PLVS S CGNS+ + +L+ AEN AREETKGLT TKWQHPA PF   P
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEP
TrEMBL top hitse value%identityAlignment
A0A0A0L8D3 Uncharacterized protein1.9e-47100Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
A0A2P5A713 Uncharacterized protein2.9e-1653.76Show/hide
Query:  PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREE--------TKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        P+RLQ +APAS++I    +WNVAIPLLSPL SPS    S+P+ +   AEN +RE+         K + F KWQHPAAPF YEP P   PFVPV
Subjt:  PTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREE--------TKGLTFTKWQHPAAPFYYEPVPRANPFVPV
A0A5D3D1A6 Uncharacterized protein5.0e-4088.78Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        MSDAERKTA   APTRLQSQAPASIEIKR L+WNV IPLLSPLVSPSSCGNS PEK+LSMA+NNAREE KGLTFTKWQHPAAPFYYEPVPRAN FVPV
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
A0A6J1CRZ0 uncharacterized protein At4g14450, chloroplastic-like9.1e-1855.24Show/hide
Query:  MSDAERKTA---TTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREET----KGLTFTKWQHPAAPFYYEPVPRAN
        M DAER+ A    +   TRLQ +AP+SI+I R  +WNVAIPLLSPLVSP        +  + M EN AREE     K  TFT+W+HPAAPFYY PV R  
Subjt:  MSDAERKTA---TTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREET----KGLTFTKWQHPAAPFYYEPVPRAN

Query:  PFVPV
        PFVPV
Subjt:  PFVPV
A0A6J1E8H9 AT-hook motif nuclear-localized protein 20-like2.0e-2065.91Show/hide
Query:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEP
        M+ +ER+      PTRLQSQAPASI I RA NWNVAIPLL+PLVS S CGNS+ + +L M EN AREETKGL  TKWQHPA PF   P
Subjt:  MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEP
SwissProt top hitse value%identityAlignment
Q6NN02 Uncharacterized protein At4g14450, chloroplastic1.1e-0739.25Show/hide
Query:  MSDAERKTATTVAP-----TRLQSQAPA-SIEIKRALNWNVAIPLLSPLVS--PSSCGNSAPEKMLSMAENNAREETKGL-TFTKWQHPAAPFYYEPVPR
        M+   ++T+++ A      ++LQ +AP+  I+     NWNVAIPLLSPL     SS   S      +  E    EE K    F KWQHPA+PF YEP   
Subjt:  MSDAERKTATTVAP-----TRLQSQAPA-SIEIKRALNWNVAIPLLSPLVS--PSSCGNSAPEKMLSMAENNAREETKGL-TFTKWQHPAAPFYYEPVPR

Query:  ANPFVPV
          PF+ V
Subjt:  ANPFVPV
Arabidopsis top hitse value%identityAlignment
AT1G04330.1 unknown protein7.4e-1246.99Show/hide
Query:  TRLQSQAPASIEIKRA-LNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRAN-PF
        +RLQ +AP  ++I     NW VAIPLLSP  SP       P  M    +   +E  K   F KWQHPAAPFYY+P P +N PF
Subjt:  TRLQSQAPASIEIKRA-LNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRAN-PF
AT3G23170.1 unknown protein1.4e-1047.19Show/hide
Query:  PTRLQSQAPASIEI---KRALNWNVAIPLLSPL-VSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
        P+RL  + PA   +     A NWN AIPLLSPL +SP S     P    + +   A E+T    F KWQHPAAPFYYE      PFVPV
Subjt:  PTRLQSQAPASIEI---KRALNWNVAIPLLSPL-VSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV
AT4G14450.1 unknown protein7.6e-0939.25Show/hide
Query:  MSDAERKTATTVAP-----TRLQSQAPA-SIEIKRALNWNVAIPLLSPLVS--PSSCGNSAPEKMLSMAENNAREETKGL-TFTKWQHPAAPFYYEPVPR
        M+   ++T+++ A      ++LQ +AP+  I+     NWNVAIPLLSPL     SS   S      +  E    EE K    F KWQHPA+PF YEP   
Subjt:  MSDAERKTATTVAP-----TRLQSQAPA-SIEIKRALNWNVAIPLLSPLVS--PSSCGNSAPEKMLSMAENNAREETKGL-TFTKWQHPAAPFYYEPVPR

Query:  ANPFVPV
          PF+ V
Subjt:  ANPFVPV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGATGCAGAGAGAAAAACTGCCACCACCGTTGCACCCACGAGGCTGCAGAGCCAGGCTCCGGCATCCATCGAGATAAAGCGGGCGCTGAATTGGAACGTGGCCAT
ACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGCTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACCAAAGGGCTAACCT
TTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGTGA
mRNA sequenceShow/hide mRNA sequence
CTTTTAACCAACCCTTAAATCTCCATTCCCAATTCTCACAATTCTCACTCCTCTCTAAACTTCTTCAACTCCTCTTGTGTTTACCCACTTGGATCTACCACCCAAAAGAG
GGGGCAAAAAAAAATGTCCGATGCAGAGAGAAAAACTGCCACCACCGTTGCACCCACGAGGCTGCAGAGCCAGGCTCCGGCATCCATCGAGATAAAGCGGGCGCTGAATT
GGAACGTGGCCATACCGTTGTTATCCCCTCTTGTATCACCTTCGTCTTGTGGGAATTCAGCTCCAGAGAAAATGTTGTCAATGGCTGAGAATAATGCGAGGGAGGAAACC
AAAGGGCTAACCTTTACCAAATGGCAGCACCCTGCGGCTCCATTTTATTATGAGCCTGTCCCAAGGGCTAACCCCTTTGTGCCTGTGTGAATATTTCTTTTTCTTCTGTT
TTTTTAACAATTCTTGTTCTGCTCAATCCATGGAACAATTTGTATGTATAAAAGTTACATCAATATTGAACTTTTCATCTCATAACTGTACACAAACC
Protein sequenceShow/hide protein sequence
MSDAERKTATTVAPTRLQSQAPASIEIKRALNWNVAIPLLSPLVSPSSCGNSAPEKMLSMAENNAREETKGLTFTKWQHPAAPFYYEPVPRANPFVPV