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CSPI03G12440 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G12440
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionAlba domain-containing protein
Genome locationChr3:9474937..9476366
RNA-Seq ExpressionCSPI03G12440
SyntenyCSPI03G12440
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR002775 - DNA/RNA-binding protein Alba-like
IPR014560 - Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related
IPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134424.1 uncharacterized protein At2g34160 [Cucumis sativus]3.4e-71100Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

XP_008438573.1 PREDICTED: uncharacterized protein At2g34160-like [Cucumis melo]1.8e-6795.3Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        MDSG VVSEA PEVKNEI+NEEE+LLV APDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

XP_022924600.1 uncharacterized protein At2g34160-like [Cucurbita moschata]4.2e-6187.92Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        M+SGMVVSEA  E+KNEIRNEEE+LLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGEN +LVMKPKIEIAL+NAEK+K ISTA TSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

XP_022980835.1 uncharacterized protein At2g34160-like [Cucurbita maxima]2.5e-6188.59Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        M+SGMVVSEA  EVKNEIRNEEE+LLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGEN +LVMKPKIEIAL+NAEK+K ISTA TSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

XP_038877187.1 uncharacterized protein At2g34160-like [Benincasa hispida]5.3e-6491.95Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        M+SGMVVSE  PEVKNEIR+EEE+LLV A D EVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLK GEN KLVMKPKIEIALVNAEKIKNISTAPTSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

TrEMBL top hitse value%identityAlignment
A0A0A0L8F8 Alba domain-containing protein1.7e-71100Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

A0A1S3AXD3 uncharacterized protein At2g34160-like8.5e-6895.3Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        MDSG VVSEA PEVKNEI+NEEE+LLV APDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

A0A5D3CZ81 Alba DNA/RNA-binding protein8.5e-6895.3Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        MDSG VVSEA PEVKNEI+NEEE+LLV APDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

A0A6J1EFH1 uncharacterized protein At2g34160-like2.0e-6187.92Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        M+SGMVVSEA  E+KNEIRNEEE+LLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGEN +LVMKPKIEIAL+NAEK+K ISTA TSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

A0A6J1IXN8 uncharacterized protein At2g34160-like1.2e-6188.59Show/hide
Query:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL
        M+SGMVVSEA  EVKNEIRNEEE+LLV APD EVKEIAVLTE KKKRNQIQVSNVKKPFFYYYNLSKR+IKQYNEVELSALGMAIPTVVTIAEILK+NGL
Subjt:  MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGL

Query:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS
        AFQK L ISSVSLKNGEN +LVMKPKIEIAL+NAEK+K ISTA TSEDS
Subjt:  AFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS

SwissProt top hitse value%identityAlignment
O22969 Uncharacterized protein At2g341601.3e-2557.28Show/hide
Query:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAP
        +K+N+IQVSN KKP F+Y NL+KR+++QYN+VELSALGMAI TVVT+ EILK NG A +KK+M S+V +K+   G+ V K KIEI LV +EK   +  A 
Subjt:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAP

Query:  TSE
          E
Subjt:  TSE

Arabidopsis top hitse value%identityAlignment
AT1G29250.1 Alba DNA/RNA-binding protein3.6e-2656.31Show/hide
Query:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAP
        +K+N+IQVSN KKP F+Y NL+KR+++QY +VELSALGMAI TVVT+AEILK NG A +KK+M S+V +K+   G+ V K KIEI L  +EK   +  A 
Subjt:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAP

Query:  TSE
          E
Subjt:  TSE

AT2G34160.1 Alba DNA/RNA-binding protein9.4e-2757.28Show/hide
Query:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAP
        +K+N+IQVSN KKP F+Y NL+KR+++QYN+VELSALGMAI TVVT+ EILK NG A +KK+M S+V +K+   G+ V K KIEI LV +EK   +  A 
Subjt:  KKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLVMKPKIEIALVNAEKIKNISTAP

Query:  TSE
          E
Subjt:  TSE

AT3G04620.1 Alba DNA/RNA-binding protein9.4e-2755.08Show/hide
Query:  ERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLV
        ER +V AP +      V T    K+N+IQVSN KKP F+Y NL+KR+I+Q+NEVELSALGMAI TVVTI+EILK NGLA +KK++ S+V +K+   GK+V
Subjt:  ERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISSVSLKNGENGKLV

Query:  MKPKIEIALVNAEKIKNI
         K KIEI L  ++K  ++
Subjt:  MKPKIEIALVNAEKIKNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGGCATGGTCGTTTCAGAAGCCGCCCCTGAGGTCAAGAATGAAATCCGAAATGAGGAAGAAAGGCTCCTCGTCGCTGCCCCTGATAGTGAGGTTAAGGAGAT
TGCTGTTTTGACCGAGTTCAAGAAGAAGAGGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCCTTCTTTTACTACTACAATCTTTCTAAGAGGCACATTAAGCAGTACA
ATGAAGTTGAGCTTTCTGCATTAGGAATGGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAGGAATGGGTTGGCATTTCAAAAGAAGTTGATGATATCTTCT
GTCAGTTTGAAGAATGGGGAAAATGGCAAGCTGGTTATGAAACCTAAGATTGAGATTGCATTGGTAAACGCAGAAAAGATCAAGAACATTTCGACTGCTCCAACAAGTGA
AGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
AACAATTAAAGAAAACCATTGTTAAACCAGAAGTTAATTTATATTTATCGTAACCATGGTTTAATCCTGAATTAATTTTCCATCGCTTTCATTTCTTAAGGGGCACACCC
GTCACCGGAAAACGCAGTAACTGCCGGTGAACGGCTGCTAAACGAAACCGTTGATACCTTAACCGCTCAAACGTCTCCGCCGTAACAAAAATTGTCTCCGCCAGCTTCTG
ATTCCTTCACATTCTTTATAAATTACTCCTGCAGTTCGATTCAGTTTATCAAAGTTCACAATTAGAAGTAGAATCTTTTCCTTCCTTCTTTGAGATTAGGCAATGGATTC
AGGCATGGTCGTTTCAGAAGCCGCCCCTGAGGTCAAGAATGAAATCCGAAATGAGGAAGAAAGGCTCCTCGTCGCTGCCCCTGATAGTGAGGTTAAGGAGATTGCTGTTT
TGACCGAGTTCAAGAAGAAGAGGAATCAAATTCAGGTTTCCAATGTCAAGAAGCCCTTCTTTTACTACTACAATCTTTCTAAGAGGCACATTAAGCAGTACAATGAAGTT
GAGCTTTCTGCATTAGGAATGGCTATACCTACTGTAGTGACGATCGCCGAGATTCTGAAGAGGAATGGGTTGGCATTTCAAAAGAAGTTGATGATATCTTCTGTCAGTTT
GAAGAATGGGGAAAATGGCAAGCTGGTTATGAAACCTAAGATTGAGATTGCATTGGTAAACGCAGAAAAGATCAAGAACATTTCGACTGCTCCAACAAGTGAAGATTCTT
GAAACAAATTTTGTTAGTAGTGTAGTATCATTCTCGGATCTGGCTTTACTTCTTGTTTGCCTACTTTGCCCATAGTTTCTATAAGAGATTAGAGATCTGCTAGGAAATAG
GAGACTGAATTGCAGATCTTTCTGTCGATGCAGATTCAATTCTAATAGAACCTAAAGAGAGGAGTTCCTTTTTTTCTCCCAATGAGATTCTTAAGGATTGGACGTAGAGA
AGCTTTCTTTGTAATTGAATTACCAACTTCTAATTGCATACAAAATTGG
Protein sequenceShow/hide protein sequence
MDSGMVVSEAAPEVKNEIRNEEERLLVAAPDSEVKEIAVLTEFKKKRNQIQVSNVKKPFFYYYNLSKRHIKQYNEVELSALGMAIPTVVTIAEILKRNGLAFQKKLMISS
VSLKNGENGKLVMKPKIEIALVNAEKIKNISTAPTSEDS