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CSPI03G13060 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G13060
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationChr3:9919630..9920766
RNA-Seq ExpressionCSPI03G13060
SyntenyCSPI03G13060
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6597439.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.4e-3191.03Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGL+RMYAA  RIMEA  VFDKMS +DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

XP_022974384.1 pentatricopeptide repeat-containing protein At4g14820-like [Cucurbita maxima]2.4e-3191.03Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGL+RMYAA  RIMEA  VFDKMS +DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

XP_022975407.1 pentatricopeptide repeat-containing protein At4g14820-like isoform X2 [Cucurbita maxima]2.4e-3191.03Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGL+RMYAA  RIMEA  VFDKMS +DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

XP_031738996.1 LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At4g14820, partial [Cucumis sativus]1.5e-3698.75Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVTTD
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAG VFDKMSHKDVVTTD
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVTTD

XP_038902272.1 pentatricopeptide repeat-containing protein At4g14820 [Benincasa hispida]5.8e-3393.59Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLV+MYAA GRIMEA  VFDKMSH+DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

TrEMBL top hitse value%identityAlignment
A0A0A0L7I1 Uncharacterized protein7.2e-3798.75Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVTTD
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAG VFDKMSHKDVVTTD
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVTTD

A0A6J1C8N9 pentatricopeptide repeat-containing protein At4g148202.0e-3189.74Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRF FPP+LKAASRNLSLRTGMEIHGLASKLGFG DPFVETGLVRMYAA GR+MEA  VFDKMSH+DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

A0A6J1H7U5 pentatricopeptide repeat-containing protein At4g148201.2e-3191.03Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGL+RMYAA  RIMEA  VFDKMS +DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

A0A6J1ICZ7 pentatricopeptide repeat-containing protein At4g14820-like isoform X21.2e-3191.03Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGL+RMYAA  RIMEA  VFDKMS +DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

A0A6J1IE29 pentatricopeptide repeat-containing protein At4g14820-like1.2e-3191.03Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGL+RMYAA  RIMEA  VFDKMS +DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

SwissProt top hitse value%identityAlignment
O23337 Pentatricopeptide repeat-containing protein At4g148206.7e-1655.13Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        +R  G  LD+F F P+LKA S+  +L  GME+HG+A K+    DPFVETG + MYA+ GRI  A  VFD+MSH+DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

Q9FI80 Pentatricopeptide repeat-containing protein At5g489104.2e-1045.12Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDK-MSHKD-VVTTD
        M  E +  +RF FP +LKA ++   ++ G +IHGLA K GFG D FV + LVRMY   G + +A  +F K +  KD VV TD
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDK-MSHKD-VVTTD

Q9LUJ2 Pentatricopeptide repeat-containing protein At3g226903.2e-1039.74Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        M   G+S D++ FP  L A +++ +   G++IHGL  K+G+  D FV+  LV  YA  G +  A  VFD+MS ++VV+
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

Q9SR82 Putative pentatricopeptide repeat-containing protein At3g088201.2e-0939.74Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        +R  GL L  F FP +LKA +R  S + G+++H L  K GF  D    T L+ +Y+ SGR+ +A  +FD++  + VVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

Q9SZK1 Pentatricopeptide repeat-containing protein At4g380104.2e-1039.47Show/hide
Query:  AEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        + G S D F FPP+ KA  +   +R G +IHG+ +K+GF  D +V+  LV  Y   G    A  VF +M  +DVV+
Subjt:  AEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

Arabidopsis top hitse value%identityAlignment
AT3G22690.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1685 (InterPro:IPR012881), Pentatricopeptide repeat (InterPro:IPR002885)2.3e-1139.74Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        M   G+S D++ FP  L A +++ +   G++IHGL  K+G+  D FV+  LV  YA  G +  A  VFD+MS ++VV+
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

AT3G22690.2 INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification2.3e-1139.74Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        M   G+S D++ FP  L A +++ +   G++IHGL  K+G+  D FV+  LV  YA  G +  A  VFD+MS ++VV+
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

AT4G14820.1 Pentatricopeptide repeat (PPR) superfamily protein4.8e-1755.13Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        +R  G  LD+F F P+LKA S+  +L  GME+HG+A K+    DPFVETG + MYA+ GRI  A  VFD+MSH+DVVT
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

AT4G38010.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.0e-1139.47Show/hide
Query:  AEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT
        + G S D F FPP+ KA  +   +R G +IHG+ +K+GF  D +V+  LV  Y   G    A  VF +M  +DVV+
Subjt:  AEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVT

AT5G48910.1 Pentatricopeptide repeat (PPR) superfamily protein3.0e-1145.12Show/hide
Query:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDK-MSHKD-VVTTD
        M  E +  +RF FP +LKA ++   ++ G +IHGLA K GFG D FV + LVRMY   G + +A  +F K +  KD VV TD
Subjt:  MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDK-MSHKD-VVTTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGCTGAGGGTCTGAGTTTGGATAGGTTCTGCTTCCCTCCGCTGTTGAAAGCGGCTTCGAGGAATCTTTCCTTGAGAACGGGGATGGAGATTCATGGACTCGCGTC
AAAGTTGGGATTCGGGTCAGACCCATTTGTGGAGACGGGGTTGGTTAGAATGTATGCAGCCAGTGGACGGATAATGGAAGCTGGGTTTGTGTTTGATAAAATGTCTCATA
AGGATGTCGTTACTACTGATTGA
mRNA sequenceShow/hide mRNA sequence
CAAACAAGTCCACGTTCCAAGTTCGATCGCTTTGATTTCGGTTCCCTTCTTTTTCAACTTATTCTTTCCTCTGGTACTCTCTCGTCTAGTCTCGACTATGCCCTCTCTGT
TTTTGATCAAATTCCCCAACCCAACACCCGTTTCTGCCACAAGCTTCTGCGAGAATTATCATGAGGTTCTGGGCCGGAGCGTGCACTTTTTGTGTACGAGAAGATGAGGG
CTGAGGGTCTGAGTTTGGATAGGTTCTGCTTCCCTCCGCTGTTGAAAGCGGCTTCGAGGAATCTTTCCTTGAGAACGGGGATGGAGATTCATGGACTCGCGTCAAAGTTG
GGATTCGGGTCAGACCCATTTGTGGAGACGGGGTTGGTTAGAATGTATGCAGCCAGTGGACGGATAATGGAAGCTGGGTTTGTGTTTGATAAAATGTCTCATAAGGATGT
CGTTACTACTGATTGATAATTTGGGTATTGCTTAAGTGGTTGTTATGATCTCGCCTTTCAACTCTTTGAAGAAATGAAGAGAACAAGCTTGGAACTAGATGAAATGATTC
TTTCTACCGTTCTTTCTGTGTGCGCTCGTGCTGAA
Protein sequenceShow/hide protein sequence
MRAEGLSLDRFCFPPLLKAASRNLSLRTGMEIHGLASKLGFGSDPFVETGLVRMYAASGRIMEAGFVFDKMSHKDVVTTD