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CSPI03G14430 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G14430
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionIsoleucyl-tRNA synthetase
Genome locationChr3:10798220..10799007
RNA-Seq ExpressionCSPI03G14430
SyntenyCSPI03G14430
Gene Ontology termsGO:0006428 - isoleucyl-tRNA aminoacylation (biological process)
GO:0106074 - aminoacyl-tRNA metabolism involved in translational fidelity (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0000049 - tRNA binding (molecular function)
GO:0002161 - aminoacyl-tRNA editing activity (molecular function)
GO:0004822 - isoleucine-tRNA ligase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR002300 - Aminoacyl-tRNA synthetase, class Ia
IPR014729 - Rossmann-like alpha/beta/alpha sandwich fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0049496.1 isoleucine--tRNA ligase [Cucumis melo var. makuwa]6.7e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

KAE8650396.1 hypothetical protein Csa_009563 [Cucumis sativus]3.1e-5298.04Show/hide
Query:  MAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANAGELLFYYNGSNMVVDLFPYV
        MAIQGYIFRGRKPVHWSPSSRTALAEA LEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+FFRDLCLAIWTTTPWTIPANAGELLFYYNGSNMVVDLFPYV
Subjt:  MAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANAGELLFYYNGSNMVVDLFPYV

Query:  SK
        SK
Subjt:  SK

TYK16176.1 isoleucine--tRNA ligase [Cucumis melo var. makuwa]6.7e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

XP_008438885.1 PREDICTED: isoleucine--tRNA ligase, chloroplastic/mitochondrial [Cucumis melo]6.7e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

XP_011651056.2 isoleucine--tRNA ligase, chloroplastic/mitochondrial [Cucumis sativus]6.7e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

TrEMBL top hitse value%identityAlignment
A0A1S3AY52 Isoleucyl-tRNA synthetase3.3e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

A0A5A7U5N1 Isoleucyl-tRNA synthetase3.3e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

A0A5D3D0J5 Isoleucyl-tRNA synthetase3.3e-4795.88Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

A0A6J1GYE1 Isoleucyl-tRNA synthetase7.2e-4794.85Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGG+LQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

A0A6J1IX89 Isoleucyl-tRNA synthetase7.2e-4794.85Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTLSPEYEA QIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGG+LQ+F  DLCLAIWTTTPWTIPANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

SwissProt top hitse value%identityAlignment
B1WVA3 Isoleucine--tRNA ligase1.0e-3468.75Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN
        LTL+PEYEA QI VFG+MA++GYI+RG KPVHWSPSS+TALAEAELEYPEGHTSRSI+A F ++K    +  +LQ F   L +AIWTTTPWT+P N
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN

B7K5H5 Isoleucine--tRNA ligase1.0e-3468.75Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN
        LTL+PEYEA QI VFGQMA++GYI+RG KPVHWSPSSRTALAEAELEYPEGHTS+SI+A F ++K    +  +L  F  +L +AIWTTTPWT+P N
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN

B7KFT1 Isoleucine--tRNA ligase2.1e-3568.75Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN
        LTL+P+YEA QI VFGQMA++GYI+RG KPVHWSPSS+TALAEAELEYPEGHTSRS+YA+F + K   ++  VL  + +DL +AIWTTTPWT+P N
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN

P73505 Isoleucine--tRNA ligase1.0e-3468.75Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN
        LTL+PEYEA QI VFG MA++GYI+RG KPVHWSPSSRTALAEAELEYPEGHTSRSIY  F + + G  +  +L  +  DL +AIWTTTPWT+P N
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPAN

Q8RXK8 Isoleucine--tRNA ligase, chloroplastic/mitochondrial3.8e-3774.23Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTL PEYEA QIEVFGQMA++GYI+RGRKPVHWSPSSRTALAEAELEYPEGH S+SIYAIF+LV  G +   +L +F  ++ LA+WTTTPWT+PANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

Arabidopsis top hitse value%identityAlignment
AT5G16715.1 ATP binding;valine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases2.6e-0435.29Show/hide
Query:  RLTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPE
        R TL  +     +E F ++  +G I++G   V+WSP+ +TA+++ E+EY E
Subjt:  RLTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPE

AT5G49030.1 tRNA synthetase class I (I, L, M and V) family protein2.7e-3874.23Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTL PEYEA QIEVFGQMA++GYI+RGRKPVHWSPSSRTALAEAELEYPEGH S+SIYAIF+LV  G +   +L +F  ++ LA+WTTTPWT+PANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

AT5G49030.2 tRNA synthetase class I (I, L, M and V) family protein2.7e-3874.23Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTL PEYEA QIEVFGQMA++GYI+RGRKPVHWSPSSRTALAEAELEYPEGH S+SIYAIF+LV  G +   +L +F  ++ LA+WTTTPWT+PANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA

AT5G49030.3 tRNA synthetase class I (I, L, M and V) family protein2.7e-3874.23Show/hide
Query:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA
        LTL PEYEA QIEVFGQMA++GYI+RGRKPVHWSPSSRTALAEAELEYPEGH S+SIYAIF+LV  G +   +L +F  ++ LA+WTTTPWT+PANA
Subjt:  LTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTATGGGCAGATTGAAACAATCCATCGTTTAACTCTCAGTCCAGAGTATGAAGCTGTCCAGATTGAGGTGTTTGGTCAAATGGCCATCCAAGGTTATATATTTAG
AGGGAGAAAGCCAGTTCACTGGAGTCCCTCATCACGAACTGCTCTTGCAGAGGCTGAATTGGAGTACCCTGAGGGGCATACTTCAAGAAGCATATACGCCATTTTTAGAT
TGGTTAAGGAAGGTCCATCTTCAGGCGGTGTGCTACAAGATTTTTTCCGAGACTTGTGCTTGGCCATATGGACTACAACTCCTTGGACTATTCCAGCCAATGCTGGTGAG
CTTTTGTTCTATTACAATGGGAGCAATATGGTTGTAGATTTATTTCCGTATGTTTCCAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTATGGGCAGATTGAAACAATCCATCGTTTAACTCTCAGTCCAGAGTATGAAGCTGTCCAGATTGAGGTGTTTGGTCAAATGGCCATCCAAGGTTATATATTTAG
AGGGAGAAAGCCAGTTCACTGGAGTCCCTCATCACGAACTGCTCTTGCAGAGGCTGAATTGGAGTACCCTGAGGGGCATACTTCAAGAAGCATATACGCCATTTTTAGAT
TGGTTAAGGAAGGTCCATCTTCAGGCGGTGTGCTACAAGATTTTTTCCGAGACTTGTGCTTGGCCATATGGACTACAACTCCTTGGACTATTCCAGCCAATGCTGGTGAG
CTTTTGTTCTATTACAATGGGAGCAATATGGTTGTAGATTTATTTCCGTATGTTTCCAAGTAA
Protein sequenceShow/hide protein sequence
MEYGQIETIHRLTLSPEYEAVQIEVFGQMAIQGYIFRGRKPVHWSPSSRTALAEAELEYPEGHTSRSIYAIFRLVKEGPSSGGVLQDFFRDLCLAIWTTTPWTIPANAGE
LLFYYNGSNMVVDLFPYVSK