; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CSPI03G16070 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G16070
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Descriptionprotein LOW PSII ACCUMULATION 2, chloroplastic
Genome locationChr3:12041566..12044135
RNA-Seq ExpressionCSPI03G16070
SyntenyCSPI03G16070
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038789 - Protein LOW PSII ACCUMULATION 2 like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067684.1 protein LOW PSII ACCUMULATION 2 [Cucumis melo var. makuwa]2.4e-9391.96Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA      TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_004148133.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis sativus]5.9e-100100Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
        MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE

Query:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_008439106.1 PREDICTED: protein LOW PSII ACCUMULATION 2, chloroplastic [Cucumis melo]2.9e-9492.46Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA      TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_023554492.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Cucurbita pepo subsp. pepo]1.2e-8181.73Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR

Query:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

XP_038899637.1 protein LOW PSII ACCUMULATION 2, chloroplastic [Benincasa hispida]1.8e-8887.44Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIAT------SSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFT++PYHLPNPSL+F SKPKFII SQNPSES+KPISK VDDAP+AT      SSPQGFGSSS QST+TSKS+PK++KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIAT------SSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDE+ AKEQ RNESYFLLTWLGLG VILV+GIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

TrEMBL top hitse value%identityAlignment
A0A0A0L8E3 Uncharacterized protein2.9e-100100Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
        MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVE

Query:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  KPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A1S3AXX6 protein LOW PSII ACCUMULATION 2, chloroplastic1.4e-9492.46Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA      TSSPQGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A5A7VJY0 Protein LOW PSII ACCUMULATION 21.2e-9391.96Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII
        MALQILHHSPSSFTK+PYHLPNPSLHFSSKPKFIIKSQNPSES+KPISK+VDDAPIA      TSS QGFGSSSPQSTSTSKSTPKS+KQKGKRQRASII
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIA------TSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        RRSPVEKPVFVG+VDEQVAKEQ RNESYFLLTWLGLGVVILV+GIVLAASGFLPEEWD+ FVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1FNA7 protein LOW PSII ACCUMULATION 2, chloroplastic1.0e-8181.73Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   LHF SK KFIIKSQNPSES+KPISK VDDAP+ TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR

Query:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE+WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

A0A6J1IBT8 protein LOW PSII ACCUMULATION 2, chloroplastic8.7e-8180.71Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR
        MALQI+HHSPSSFT++PYHLP   L+F SKPKFIIKSQ+PSES+KPISK VDDA + TSS QGFGS S QST++SKS+PK+     KQKGKRQRASIIRR
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSL----KQKGKRQRASIIRR

Query:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS
        SPVEKPVFVG+VDE+  KEQG+NESYFLLTWLGLG VILV+GIVLAASGFLPE WDKFFVKYLYPSFTPTVSLFVAGTVAYGV KYLQNEK+K +KS
Subjt:  SPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS

SwissProt top hitse value%identityAlignment
F4KDA6 Protein LPA24.1e-4354.55Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII
        MALQI  HSP SF+ RPYHL       +  P+F IK QN   ESD       D +    SS  G G  SP S+S+     S +T  + K KGKR+   + 
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK

Arabidopsis top hitse value%identityAlignment
AT5G51545.1 low psii accumulation22.9e-4454.55Show/hide
Query:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII
        MALQI  HSP SF+ RPYHL       +  P+F IK QN   ESD       D +    SS  G G  SP S+S+     S +T  + K KGKR+   + 
Subjt:  MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPS-ESDKPISKVVDDAPIATSSPQGFGSSSPQSTST-----SKSTPKSLKQKGKRQRASII

Query:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK
        RR+PVEKPVF+ +     A+EQ +NE+ FLLTWLGLG+VIL++GI+LAASGFLPEE DK FVKY+YP FTP+V LFVAGT AYGVLKY+QNEK+K ++
Subjt:  RRSPVEKPVFVGQVDEQVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCTACAAATACTCCACCATTCTCCCTCTTCCTTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATC
TCAGAACCCATCTGAATCTGACAAACCCATTTCCAAAGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCA
CGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGGGTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAA
CAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTATTTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTT
ACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTTGTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTC
AGAATGAGAAAATAAAAGATGAAAAATCATAA
mRNA sequenceShow/hide mRNA sequence
GGACATAAGAAGAAGTTAGATAGAGATCAATTATTTTTCAGACAAAAAAGGAAAAAGAAAACCCTAAATTATTGATAATTGTGAATGTGAAGAGAGCGTGGGGGAACTTA
GGAAGTGAAGTTTGAAGGGAACAATAAAATTCATAATTCCCAACCAAAGCAAACCTTAACCAAATAAACTGAAAATGGCGCTACAAATACTCCACCATTCTCCCTCTTCC
TTCACCAAAAGACCCTATCATCTTCCCAACCCATCTCTCCATTTCTCTTCTAAACCTAAATTCATCATCAAATCTCAGAACCCATCTGAATCTGACAAACCCATTTCCAA
AGTTGTTGACGATGCTCCAATTGCGACTTCATCCCCTCAAGGTTTCGGCTCTTCATCACCTCAATCAACGTCCACGAGCAAATCAACTCCAAAGTCTCTGAAGCAGAAGG
GTAAGCGTCAAAGGGCATCCATTATTCGGCGCTCTCCTGTGGAGAAACCCGTGTTTGTTGGCCAAGTAGATGAACAGGTTGCTAAGGAACAGGGCAGAAACGAGAGCTAT
TTTCTTCTTACTTGGTTGGGTCTTGGTGTTGTGATTCTCGTCCAGGGGATTGTTCTTGCGGCATCTGGTTTCTTACCGGAAGAGTGGGACAAATTCTTCGTCAAATATTT
GTATCCTTCCTTCACACCAACCGTTTCTCTGTTTGTTGCTGGAACTGTTGCATACGGAGTTTTGAAGTATCTTCAGAATGAGAAAATAAAAGATGAAAAATCATAATTTA
ATCCTTTTTGCTCGATGCTTTGTATTTGGTGTGAAGACCTGAAATTTCCCAAGTGTCTATAGATCCTGTTTGTATAAAGTGTCTCATTTTCTGAGAAACTGAGATGAAAA
TTTTTTGAGCTCGAAAGCAAATGAGATGCTGTTGTTGAATCCTAGGAAACTCTTTGCCATCATTTTATTATTATTATGGGCTTTAGTTTCATTAGCAATAATCTCTCGAT
AGATTACTTCTGTAATTATCTTAAGATTGAGAATAACCTATTGTATAGATCCCTTAAGTAATTCAAGGAGCTATCTGCCTCGC
Protein sequenceShow/hide protein sequence
MALQILHHSPSSFTKRPYHLPNPSLHFSSKPKFIIKSQNPSESDKPISKVVDDAPIATSSPQGFGSSSPQSTSTSKSTPKSLKQKGKRQRASIIRRSPVEKPVFVGQVDE
QVAKEQGRNESYFLLTWLGLGVVILVQGIVLAASGFLPEEWDKFFVKYLYPSFTPTVSLFVAGTVAYGVLKYLQNEKIKDEKS