CuGenDBv2

Gene ID	CSPI03G17440
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Gamma-tubulin complex component
Genome location	Chr3:13080739..13082362
RNA-Seq Expression	CSPI03G17440
Synteny	CSPI03G17440
Gene Ontology terms	GO:0007020 - microtubule nucleation (biological process) GO:0007049 - cell cycle (biological process) GO:0000922 - spindle pole (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0005815 - microtubule organizing center (cellular component) GO:0005874 - microtubule (cellular component) GO:0043015 - gamma-tubulin binding (molecular function)
InterPro domains	IPR007259 - Gamma-tubulin complex component protein IPR040457 - Gamma tubulin complex component, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0060739.1 gamma-tubulin complex component 6 isoform X2 [Cucumis melo var. makuwa]

2.3e-53

80.15

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +L  CFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQVLVIKKRFDR++KELHLCHLK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPKVGDFGLSRLWECLNYNYHY  TGNEMSYYAFSV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

TYK01481.1 Gamma-tubulin complex component 6 [Cucumis melo var. makuwa]

1.3e-53

92.79

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Query:  GCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLKSPKVGDFGLSRLWECLNYNYHYPIT
        GCFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQVLVIKKRFDR++KELHLCHLKSPKVGDFGLSRLWECLNYNYHY  T
Subjt:  GCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLKSPKVGDFGLSRLWECLNYNYHYPIT

Query:  GNEMSYYAFSV
        GNEMSYYAFSV
Subjt:  GNEMSYYAFSV

XP_008457080.1 PREDICTED: uncharacterized protein LOC103496848 [Cucumis melo]

1.1e-52

79.41

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +L  CFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQVLVIKKRFDR++KELHLCHLK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPKVGDFGLSRLWECLNYNYHY  TGNEMSYYA SV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

XP_011651193.1 uncharacterized protein LOC101209612 isoform X1 [Cucumis sativus]

4.0e-58

86.03

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +L  CFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

XP_023533555.1 uncharacterized protein LOC111795389 isoform X1 [Cucurbita pepo subsp. pepo]

3.9e-45

69.85

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +   CFLSEET SVA  INQ+LQCALDLRCCFTGDMWNTQVD+AASSRRLSEINK+QVL +KKRFD+++KELHL +LK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPK+GD+GLSRLWE  NYN HY  TGNEM+YYAFSV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C4N8 uncharacterized protein LOC103496848

5.5e-53

79.41

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +L  CFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQVLVIKKRFDR++KELHLCHLK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPKVGDFGLSRLWECLNYNYHY  TGNEMSYYA SV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

A0A5A7V4S0 Gamma-tubulin complex component 6 isoform X2

1.1e-53

80.15

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +L  CFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQVLVIKKRFDR++KELHLCHLK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPKVGDFGLSRLWECLNYNYHY  TGNEMSYYAFSV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

A0A5D3BNY3 Gamma-tubulin complex component

6.5e-54

92.79

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Query:  GCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLKSPKVGDFGLSRLWECLNYNYHYPIT
        GCFLSEETQ VAS INQ+LQCALDLRCCFT DMWNTQVDHAASSRRLSEINKAQVLVIKKRFDR++KELHLCHLKSPKVGDFGLSRLWECLNYNYHY  T
Subjt:  GCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLKSPKVGDFGLSRLWECLNYNYHYPIT

Query:  GNEMSYYAFSV
        GNEMSYYAFSV
Subjt:  GNEMSYYAFSV

A0A6J1H3E0 uncharacterized protein LOC111459753 isoform X1

1.6e-44

68.38

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +   CFLSEET SVA  INQ+LQCALDLRCCFTGDMWNTQVD+AASSRRLSEINK+QVL +K+RFD+++KELHL +LK
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPK+G++GLSRLWE  NYN HY  TGNEM+YYAFSV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

A0A6J1K7L9 uncharacterized protein LOC111490907 isoform X1

1.1e-42

66.18

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SL+ KAK +M        +   +   CFLSEET SVA  INQ+LQCALDLRCCFTGDMWNTQVD+AASSRRLSEINK+ VL +KK+FD+++KELHL + K
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV
        SPK+G++GLS+LWE LNYN HY  TGNEM+YY FSV
Subjt:  SPKVGDFGLSRLWECLNYNYHYPITGNEMSYYAFSV

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G43610.1 Spc97 / Spc98 family of spindle pole body (SBP) component

3.8e-22

42.62

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Query:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK
        SLK+K K +M        +   +L  CFLS+ETQ +++ I  +LQCALD R C    + +T      S  +   IN +QV+++K+ FD+ +KELH CHL+
Subjt:  SLKSKAKVLM------KHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLK

Query:  SPKVGDFGLSRLWECLNYNYHY
        SPK G +GLSR W+ LN+N +Y
Subjt:  SPKVGDFGLSRLWECLNYNYHY

Sequences

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CDS sequence

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mRNA sequence

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ATGGTAGAGGCTCTGTTTGGGTGGTCCTTGAAAAGCAAAGCAAAGGTTTTGATGAAACACTTCTGGATCTCTTCTCTTTTGGGATGTTTCTTATCTGAAGAAACCCAATC
TGTGGCCAGTACCATTAATCAACTCTTGCAATGTGCTCTAGATCTCCGATGTTGTTTTACTGGTGACATGTGGAATACTCAAGTTGATCATGCAGCTTCTTCGAGGAGAC
TTTCTGAGATCAACAAGGCTCAGGTACTTGTCATAAAGAAGAGATTTGATAGAAGCATAAAGGAATTGCACCTATGTCATTTGAAGTCCCCTAAGGTTGGAGATTTTGGG
CTATCTCGACTTTGGGAATGTCTCAATTACAACTATCACTACCCTATCACTGGTAATGAAATGAGTTACTATGCTTTCTCAGTCTAATGGTATATTTCAAACCACAAAAG
ATATGGGGCATCATTAAAGTGTTTTTGAAATTGAATTCGATAGATACGTTCGAGGTGGGGTTTTTTCTACAATGTTTGAATGTTTGTAATTAGAACCATGTTGCATTCAA
GATTTCTTAGTGATGATGCTATGCTATCCCTTCACACATAGGTTTGGTTCTTGTAATGAGTAGTACTGCTATTACTTTGGTAGTTGCTTCCTTTTCTTTTCTTTTCTTTT
TTTAAAATTGAAGTGTGCGGATGTGTGGCTTT

Protein sequence

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MVEALFGWSLKSKAKVLMKHFWISSLLGCFLSEETQSVASTINQLLQCALDLRCCFTGDMWNTQVDHAASSRRLSEINKAQVLVIKKRFDRSIKELHLCHLKSPKVGDFG
LSRLWECLNYNYHYPITGNEMSYYAFSV

CSPI03G17440 (gene) of Cucumber (PI 183967) v1 genome