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CSPI03G17460 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G17460
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationChr3:13084354..13085077
RNA-Seq ExpressionCSPI03G17460
SyntenyCSPI03G17460
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033702.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-4158.6Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+TM+NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

KAA0060331.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]5.4e-4359.87Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE+QLQ+RDEML ALK HL+HAQE++KK ++VHRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PDI M+NDQME V+EPEN+TQ+RWN AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

KAA0062470.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.9e-4157.32Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE+QLQ+R+EML ALK HL+HAQE++KK  DVHRRDV F IG                                    VGEV+YLLDLPET K
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+ M+NDQME +LEPEN+TQ+RWN+A RDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-4157.32Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE QLQ+RDEML  LK HL+HAQE+++K +++HRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

TYK22994.1 putative membrane protein YjcL-like [Cucumis melo var. makuwa]1.7e-4157.96Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

TrEMBL top hitse value%identityAlignment
A0A5A7SR72 Ty3/gypsy retrotransposon protein5.0e-4258.6Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+TM+NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

A0A5A7V5G0 Ty3/gypsy retrotransposon protein1.9e-4157.32Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE+QLQ+R+EML ALK HL+HAQE++KK  DVHRRDV F IG                                    VGEV+YLLDLPET K
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+ M+NDQME +LEPEN+TQ+RWN+A RDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

A0A5D3BD16 Ty3/gypsy retrotransposon protein2.5e-4157.32Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE QLQ+RDEML  LK HL+HAQE+++K +++HRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

A0A5D3DFB4 Transposon Ty3-G Gag-Pol polyprotein2.6e-4359.87Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE+QLQ+RDEML ALK HL+HAQE++KK ++VHRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PDI M+NDQME V+EPEN+TQ+RWN AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

A0A5D3DH98 Putative membrane protein YjcL-like8.5e-4257.96Show/hide
Query:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK
        GTT NDSVE QLQ+RDEML  LK HL+HAQE++KK +++HRRDV F IG                                    VGEVAYLLDLPETAK
Subjt:  GTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIG------------------------------------VGEVAYLLDLPETAK

Query:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ
        IHPVF+VSQLKKA+ DKH + PD+T++NDQME VLEPEN+ Q RWN+AERDWEYL+Q
Subjt:  IHPVFYVSQLKKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGCGGG
CACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCG
ATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTT
AAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGA
TGCTGAACGAGATTGGGAATATTTAATTCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCAATCAGAGGTCGTTAACAATTGCTTGGAACTATACTTATGGTGTTTTTGTCACAAGAAACCACAAACATGGAGTGATAAAATTGCATGGGCCGAGTATTGCGGG
CACCACCTCGAATGATTCGGTGGAATATCAGTTGCAAGCTCGAGACGAAATGCTAACTGCCTTAAAGGGTCATTTGAGACATGCACAAGAGAAAATTAAAAAAATTTCCG
ATGTGCATCGTAGAGACGTGGCTTTTGGCATTGGAGTGGGGGAGGTAGCCTATTTGTTGGACCTGCCGGAAACTGCCAAAATCCACCCGGTTTTCTACGTTTCACAACTT
AAGAAAGCGCTGGAAGATAAACATACAATCCAACCAGATATAACCATGCTCAATGATCAAATGGAGTTTGTTTTGGAACCTGAAAACATGACCCAAATTCGTTGGAACGA
TGCTGAACGAGATTGGGAATATTTAATTCAATGAAAGGATCAGCCAAGCCATGAAGCAACATGAGAGTCCTACGCTATGCTTACTAACCAA
Protein sequenceShow/hide protein sequence
MGNQRSLTIAWNYTYGVFVTRNHKHGVIKLHGPSIAGTTSNDSVEYQLQARDEMLTALKGHLRHAQEKIKKISDVHRRDVAFGIGVGEVAYLLDLPETAKIHPVFYVSQL
KKALEDKHTIQPDITMLNDQMEFVLEPENMTQIRWNDAERDWEYLIQ