CuGenDBv2

Gene ID	CSPI03G17540
Organism	Cucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Integrase catalytic domain-containing protein
Genome location	Chr3:13152873..13154040
RNA-Seq Expression	CSPI03G17540
Synteny	CSPI03G17540
Gene Ontology terms	GO:0006807 - nitrogen compound metabolic process (biological process) GO:0043170 - macromolecule metabolic process (biological process) GO:0044237 - cellular metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0005622 - intracellular (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase

Homology

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GenBank top hits

e value

%identity

Alignment

CAN63175.1 hypothetical protein VITISV_027195 [Vitis vinifera]

4.5e-40

54.25

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MS+PEAP+W+EA+N E++SIMHNH W+L+DLP GN PLGC                         +KQ+E LD+FDTYSP+TRITSIR LIA + LH  +
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKSNENDHVI
        IHQMD KT FLNGEL+EEIY++ PE     + FK+NECDKCVY K+ ++++VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKSNENDHVI

CAN63736.1 hypothetical protein VITISV_037249 [Vitis vinifera]

5.0e-39

47.31

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MS+ EAP+W+EA+N+E++SIMHNH W+L+DLP GN  LGC                         +KQ+E LD+FDTYSP+TRITSIR+LIAI ALH  E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGEL+E+IY++ PEG                                 VM++N FKINE DKCVY K+ ++++VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

RVW42300.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

1.6e-40

49.46

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                         YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY+  PEG                                  MI+NGFKINECDKCVY K+ +  +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

RVW67328.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.9e-40

48.39

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                         YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  +
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY+  PEG                                  MI+NGFKINECDKC+Y K+ +  +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

RVW67960.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

4.5e-40

48.92

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                         YKQ+E LDYFDTYSP+++ITSIRMLIAI+A++  E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY+  PEG                                  MI+NGFKINECDKCVY K+ +  +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

TrEMBL top hits

e value

%identity

Alignment

A0A2N9HXG0 Integrase catalytic domain-containing protein

1.4e-39

48.92

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MS PEAP W+EAVN+E++SI+ NH WEL+DLP G  PLG                          YKQ+E +DYFDTYSP+TRITSIRMLIAI+AL+  E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY++ PEG                                  M++NGF+INECDKCVY K+  + +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

A0A438E3U6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

7.5e-41

49.46

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                         YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY+  PEG                                  MI+NGFKINECDKCVY K+ +  +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

A0A438G546 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-40

48.39

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                         YKQ+E LDYFDTYSP++RITSIRMLIAI+A++  +
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY+  PEG                                  MI+NGFKINECDKC+Y K+ +  +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

A0A438G6X1 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-40

48.92

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MSSPEA YW+EA+N+E++SI+ NH WEL+DLP G   LGC                         YKQ+E LDYFDTYSP+++ITSIRMLIAI+A++  E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI
        IHQMDVKT FLNGELDEEIY+  PEG                                  MI+NGFKINECDKCVY K+ +  +VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEG---------------------------------VMIANGFKINECDKCVYFKSNENDHVI

A5B5M4 Reverse transcriptase Ty1/copia-type domain-containing protein

2.2e-40

54.25

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        MS+PEAP+W+EA+N E++SIMHNH W+L+DLP GN PLGC                         +KQ+E LD+FDTYSP+TRITSIR LIA + LH  +
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKSNENDHVI
        IHQMD KT FLNGEL+EEIY++ PE     + FK+NECDKCVY K+ ++++VI
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKSNENDHVI

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.4e-15

30.37

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Query:  WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKT
        WEEA+NTE+ +   N+ W +   P   N +                           + Q+ ++DY +T++P+ RI+S R ++++   +  ++HQMDVKT
Subjt:  WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKT

Query:  IFLNGELDEEIYIQSPEGVMIANGFKINECDKCVY
         FLNG L EEIY++ P+G+   N   + + +K +Y
Subjt:  IFLNGELDEEIYIQSPEGVMIANGFKINECDKCVY

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.7e-16

31.54

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Query:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE
        +S PE     +A+  E++S+  N  ++L++LP G  PL C                         ++Q++ +D+ + +SP+ ++TSIR +++++A    E
Subjt:  MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFE

Query:  IHQMDVKTIFLNGELDEEIYIQSPEGVMIA
        + Q+DVKT FL+G+L+EEIY++ PEG  +A
Subjt:  IHQMDVKTIFLNGELDEEIYIQSPEGVMIA

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.7e-10

27.73

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Query:  WEEAVNTEVKSIMHNHIWELIDLPLGN-NPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVK
        W  A+ +E+ + + NH W+L+  P  +   +GC                         Y Q+  LDY +T+SP+ + TSIR+++ ++    + I Q+DV 
Subjt:  WEEAVNTEVKSIMHNHIWELIDLPLGN-NPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVK

Query:  TIFLNGELDEEIYIQSPEG
          FL G L +++Y+  P G
Subjt:  TIFLNGELDEEIYIQSPEG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

7.8e-11

28.57

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Query:  WEEAVNTEVKSIMHNHIWELIDLPLGN-NPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVK
        W +A+ +E+ + + NH W+L+  P  +   +GC                         Y Q+  LDY +T+SP+ + TSIR+++ ++    + I Q+DV 
Subjt:  WEEAVNTEVKSIMHNHIWELIDLPLGN-NPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVK

Query:  TIFLNGELDEEIYIQSPEG
          FL G L +E+Y+  P G
Subjt:  TIFLNGELDEEIYIQSPEG

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.9e-20

32.61

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Query:  WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKT
        W  A++ E+ ++   H WE+  LP    P+GC                         Y QQE +D+ +T+SP+ ++TS+++++AISA++ F +HQ+D+  
Subjt:  WEEAVNTEVKSIMHNHIWELIDLPLGNNPLGC-------------------------YKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKT

Query:  IFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKS
         FLNG+LDEEIY++ P G     G  +     C   KS
Subjt:  IFLNGELDEEIYIQSPEGVMIANGFKINECDKCVYFKS

Sequences

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CDS sequence

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ATGTCCTCTCCTGAAGCTCCATATTGGGAAGAGGCTGTGAATACTGAAGTTAAGTCCATTATGCATAACCATATTTGGGAACTAATTGATCTTCCATTAGGAAATAATCC
ACTTGGTTGTTACAAGCAACAAGAAGAACTTGACTATTTTGATACATACTCACCAATTACTCGAATTACTTCCATTCGCATGCTCATAGCAATATCAGCTTTGCATGGAT
TTGAGATACATCAGATGGATGTCAAGACGATATTTTTAAACGGTGAGTTAGATGAAGAGATCTACATTCAATCACCTGAAGGTGTAATGATAGCCAATGGGTTTAAAATC
AATGAATGTGACAAATGTGTATATTTCAAAAGCAACGAGAATGACCATGTCATTGCTATAGTGAAGCCAATTGGATATCGAGCACTAAAGGCTCCAAATCCACCAGTGGT
TACATTTTTACCCTTGGAAGCGGTACTGTTTCTTGAAAATCTTTCAAACAAACATGTA

mRNA sequence

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Protein sequence

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MSSPEAPYWEEAVNTEVKSIMHNHIWELIDLPLGNNPLGCYKQQEELDYFDTYSPITRITSIRMLIAISALHGFEIHQMDVKTIFLNGELDEEIYIQSPEGVMIANGFKI
NECDKCVYFKSNENDHVIAIVKPIGYRALKAPNPPVVTFLPLEAVLFLENLSNKHV

CSPI03G17540 (gene) of Cucumber (PI 183967) v1 genome