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CSPI03G17740 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G17740
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
Description40S ribosomal protein S19
Genome locationChr3:13312920..13313306
RNA-Seq ExpressionCSPI03G17740
SyntenyCSPI03G17740
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0006952 - defense response (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6193.75Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

XP_004141465.1 40S ribosomal protein S19-3 [Cucumis sativus]1.6e-6192.97Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATA+ VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YDADWYY+RAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

XP_004148892.2 40S ribosomal protein S19-3 [Cucumis sativus]1.2e-6193.75Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

XP_011651209.1 40S ribosomal protein S19-3 [Cucumis sativus]9.8e-67100Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
        VRHILQQLQEMNIVDVDPKGGKRITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]1.2e-6193.75Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

TrEMBL top hitse value%identityAlignment
A0A0A0K500 Uncharacterized protein4.2e-6395.31Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
        VRHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

A0A0A0L6V0 Uncharacterized protein4.8e-67100Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
        VRHILQQLQEMNIVDVDPKGGKRITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

A0A5D3D4N1 40S ribosomal protein S19-3-like6.0e-6293.75Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPW DIV TARFKELA YDADWYYVRAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

A0A6J1H7M6 40S ribosomal protein S19-3-like6.0e-6293.75Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

A0A6J1JTW8 40S ribosomal protein S19-3-like6.0e-6293.75Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MATAR VKDVSPHEFVKAYAAHLKRS KVELPPWTDIV TARFKELA YD DWYYVRAASMARKIYLRGGLGVGAFKRIY GSKRNGSRPPHFCESSGAI
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQEMNIVDVDPKGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S195.4e-5275.59Show/hide
Query:  ATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIV
        +TAR VKDV+PHEFVKAY+AHLKRS K+ELP W DIV TARFKEL  YD DWYY RAAS+ARKIYLR G+GVG F++IY G +RNGSRPPHFC+SSGAI 
Subjt:  ATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIV

Query:  RHILQQLQEMNIVDVDPKGGKRITSSG
        R+ILQQLQ+M I+DVDPKGG+ ITS G
Subjt:  RHILQQLQEMNIVDVDPKGGKRITSSG

Q94613 40S ribosomal protein S194.2e-3652.46Show/hide
Query:  VKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQ
        VKDVS HEF +A+AA LK+S K+++P WTD V T  FKEL+ Y+ DWY++RAAS+ R +Y+R   G+G+F++IY G +R G+ P HFC+++G+I R +LQ
Subjt:  VKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQ

Query:  QLQEMNIVDVDPKGGKRITSSG
         L+ + IV+ DP GG+R+TS G
Subjt:  QLQEMNIVDVDPKGGKRITSSG

Q9FNP8 40S ribosomal protein S19-35.6e-5780.47Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAASMARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG +
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQ MNIVD+D KGG++ITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

Q9LF30 40S ribosomal protein S19-28.1e-5679.69Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAASMARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQL+ M+IV++D KGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

Q9SGA6 40S ribosomal protein S19-13.6e-5678.91Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAASMARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQL+ MNIV++D KGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein2.6e-5778.91Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T + KELA YD DWYY+RAASMARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQL+ MNIV++D KGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

AT5G15520.1 Ribosomal protein S19e family protein5.8e-5779.69Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MAT + VKDVSPH+FVKAYA+HLKRS K+ELP WTDIV T R KELA YD DWYY+RAASMARKIYLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG I
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQL+ M+IV++D KGG+RITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG

AT5G61170.1 Ribosomal protein S19e family protein4.0e-5880.47Show/hide
Query:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI
        MAT + VKDVSPHEFVKAYAAHLKRS K+ELP WTDIV T + KELA YD DWYY+RAASMARK+YLRGGLGVGAF+RIY GSKRNGSRPPHFC+SSG +
Subjt:  MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAI

Query:  VRHILQQLQEMNIVDVDPKGGKRITSSG
         RHILQQLQ MNIVD+D KGG++ITSSG
Subjt:  VRHILQQLQEMNIVDVDPKGGKRITSSG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATAT
TGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTG
GAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAG
ATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCACTGCTAGGATCGTCAAAGATGTCTCTCCTCACGAGTTTGTTAAGGCCTATGCCGCTCATCTCAAACGATCCGAAAAGGTTGAACTTCCACCATGGACGGATAT
TGTCATAACTGCAAGATTCAAGGAACTTGCTCGATATGATGCAGATTGGTACTATGTGAGAGCTGCATCCATGGCAAGGAAGATCTACTTGAGAGGAGGTCTTGGTGTTG
GAGCATTCAAGCGGATTTACAATGGAAGCAAGAGGAACGGAAGTCGCCCTCCACACTTCTGTGAAAGCAGTGGAGCCATTGTTCGCCACATTCTACAACAATTGCAGGAG
ATGAACATTGTTGATGTGGACCCAAAGGGTGGAAAGAGAATTACTTCAAGTGGCTGA
Protein sequenceShow/hide protein sequence
MATARIVKDVSPHEFVKAYAAHLKRSEKVELPPWTDIVITARFKELARYDADWYYVRAASMARKIYLRGGLGVGAFKRIYNGSKRNGSRPPHFCESSGAIVRHILQQLQE
MNIVDVDPKGGKRITSSG