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CSPI03G18350 (gene) of Cucumber (PI 183967) v1 genome

Gene IDCSPI03G18350
OrganismCucumis sativus L. var. sativus cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionReverse transcriptase
Genome locationChr3:13996669..13996976
RNA-Seq ExpressionCSPI03G18350
SyntenyCSPI03G18350
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026281.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-1548.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVA++L LPMELSRIH +FHVSMLR                                KKEQVL+ KVIP+ K+L  NH  EEATWE+E+ MKA+YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

KAA0035225.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-1448.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVAY+L LPMELSRIH+VFHVSMLR                                KKEQVL+ KVIP+ K+L  NH  EEATWE+E+ +K +YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

KAA0050651.1 uncharacterized protein E6C27_scaffold673G001250 [Cucumis melo var. makuwa]3.1e-1448.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVAY+L LPMELSRIH+VFHVSMLR                                KKEQVL+ KVIP+ K+L  N+  EEA WE+E+ MK KYP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

TYK21477.1 reverse transcriptase [Cucumis melo var. makuwa]6.3e-1548.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVA++L LPMELSRIH +FHVSMLR                                KKEQVL+ KVIP+ K+L  NH  EEATWE+E+ MKA+YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

XP_038896631.1 uncharacterized protein LOC120084893 [Benincasa hispida]3.7e-1550.51Show/hide
Query:  PVAYKLKLPMELSRIHNVFHVSMLRK--------------------------------KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF
        P+AYKL+LP+EL+RIHNVFHVSMLRK                                KEQVL  K IP+ K+L +NHGVE+ATWE EE +K KYPQLF
Subjt:  PVAYKLKLPMELSRIHNVFHVSMLRK--------------------------------KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLF

TrEMBL top hitse value%identityAlignment
A0A5A7SQ03 Reverse transcriptase3.0e-1548.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVA++L LPMELSRIH +FHVSMLR                                KKEQVL+ KVIP+ K+L  NH  EEATWE+E+ MKA+YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

A0A5A7SX06 DNA/RNA polymerases superfamily protein9.8e-1446.08Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLRK--------------------------------KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GP AY+L+LP+EL+RIH+VFHVSMLRK                                KEQVL+ K IP+ K+L  +HG EEATWESE  MK +YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLRK--------------------------------KEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  FA
        F+
Subjt:  FA

A0A5D3C784 Integrase catalytic domain-containing protein1.5e-1448.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVAY+L LPMELSRIH+VFHVSMLR                                KKEQVL+ KVIP+ K+L  N+  EEA WE+E+ MK KYP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

A0A5D3DCU0 Reverse transcriptase3.0e-1548.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVA++L LPMELSRIH +FHVSMLR                                KKEQVL+ KVIP+ K+L  NH  EEATWE+E+ MKA+YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

A0A5D3DES5 DNA/RNA polymerases superfamily protein5.2e-1548.51Show/hide
Query:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL
        +GPVAY+L LPMELSRIH+VFHVSMLR                                KKEQVL+ KVIP+ K+L  NH  EEATWE+E+ +K +YP L
Subjt:  MGPVAYKLKLPMELSRIHNVFHVSMLR--------------------------------KKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQL

Query:  F
        F
Subjt:  F

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGACCGGTGGCTTATAAGTTAAAGTTACCTATGGAGCTATCTAGAATTCATAATGTCTTTCACGTTTCAATGTTACGAAAAAAGGAACAAGTATTGAAAACCAAGGT
GATTCCTATGAGCAAAATTTTGCAGAGCAACCATGGCGTTGAAGAAGCCACTTGGGAAAGTGAGGAATTAATGAAAGCTAAGTACCCACAACTCTTCGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGACCGGTGGCTTATAAGTTAAAGTTACCTATGGAGCTATCTAGAATTCATAATGTCTTTCACGTTTCAATGTTACGAAAAAAGGAACAAGTATTGAAAACCAAGGT
GATTCCTATGAGCAAAATTTTGCAGAGCAACCATGGCGTTGAAGAAGCCACTTGGGAAAGTGAGGAATTAATGAAAGCTAAGTACCCACAACTCTTCGCATAA
Protein sequenceShow/hide protein sequence
MGPVAYKLKLPMELSRIHNVFHVSMLRKKEQVLKTKVIPMSKILQSNHGVEEATWESEELMKAKYPQLFA